Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g828 ATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGGATCGCTAGGAACAGCACCCATCAGATTGGTAGTAGGCTGAACTGGAGCAGAAACTATGCTGCTAAAGACATCAGATTCGGGGTTGAGGCTCGAGCCTTGATGCTTAAGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAGATGGTGTAACTGTTGCAAAAAGCATTGAGTTCAAGGATCGAATCAAGAATGTTGGTGCAAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAAGTCGGTTGCTGCTGGAATGAATGCAATGGACCTAAGAAGGGGTATCTCGATGGCAGTAGATGCTGTAGTGACAAACTTGAAAAGCAGAGCTAAGATGATCAGCACATCTGAAGAAATAGCACAGGTTGGGACAATATCAGCAAATGGTGAGAGAGAAATTGGTGAATTGATCGCAAAGGCTATGGAGAAAGTTGGCAAAGAGGGAGTAATCACAATTTCAGATGGGAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTGGCCACTCTTATTCTAAATAAGCTTCGTGCTGGAATCAAGGTCTGTGCCATCAAAGCACCTGGGTTTGGAGAGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAGCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATGCTTGGCACTTGCAAAAAGGTTACAATATCTAAGGACGATACTGTTATCCTTGATGGGGCTGGTGACAAGAAGGCCATTGAGGAACGGTGTGAGCAGATTAGGTCAGCCATTGAATTGAGCACTTCTGATTATGACAAGGAAAAGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCTGAAAACACCTGTGTTCACAATTGCTTCTAATGCTGGAGTTGAGGGGGCTGTTGTGGTTGGGAAGCTGTTGGAGCAGGATAACCCTGATCTTGGATATGATGCGGCCAAAGGTGAATATGTTGATATGGTCAAAGCTGGAATTATTGATCCACTGAAAGTAATTAGAACAGCTTTGGTTGATGCTGCAAGTGTGTCATCGTTGATGACAACAACTGAAGCTGTTGTGGTTGAACTGCCAAAGGATGAGAAGGAAGTTCCTGCAATGGGAGGTGGCATGGGTGGCATGGACTACTAA 1728 45.14 MYRFATSLASKARIARNSTHQIGSRLNWSRNYAAKDIRFGVEARALMLKGVEELADAVRVTMGPKGRNVVLEQSFGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSRAKMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKTQKCELENPLVLIHEKKISNIHAVVKVLEMALKTQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAALQDLATLTGGELITEELGLNLEKAELDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTSNFDQKIGVQIIQNALKTPVFTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVVELPKDEKEVPAMGGGMGGMDY* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10894991 10900932 + Vvi5g828 Vvi5g828 786970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g828 575 SUPERFAMILY GroEL-intermediate domain like 169 237 IPR027410 -
Vvi5g828 575 SUPERFAMILY GroEL apical domain-like 216 407 IPR027409 -
Vvi5g828 575 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL-LIKE 11 570 - -
Vvi5g828 575 Gene3D - 168 441 IPR027410 -
Vvi5g828 575 Gene3D - 37 554 IPR027413 -
Vvi5g828 575 TIGRFAM GroEL: chaperonin GroL 34 558 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 Hamap Chaperonin GroEL [groEL]. 33 573 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 Gene3D GroEL 223 404 IPR027409 -
Vvi5g828 575 SUPERFAMILY GroEL equatorial domain-like 38 553 IPR027413 -
Vvi5g828 575 CDD GroEL 35 555 IPR001844 GO:0042026|GO:0140662
Vvi5g828 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 11 570 - -
Vvi5g828 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Vvi5g828 575 Pfam TCP-1/cpn60 chaperonin family 54 555 IPR002423 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g828 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - vvi:100244356 1072.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91