Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g829 ATGTTCAATTACTCAGATCTGGAATCACTGCCCAATGTTTTACAAAGAAAGTATGCTTTGTTGCGTGATTTAGATAAAAGCTTACAGGAAATCCAACGGCAAAATGAGCAGCGTTGTGAGCAAGAGATAGAGGATATTAAGCAGGGAGTCAAGTCTGGTAATATTACGCCAGATCCTTCACTCATCAGATTCTCAGATGAGGCACTGGATGAGCAAAAACATTCAATCAGGATTGCTGATGAGAAGGTTGCTTTGGCTGTTCAAGCATATGATTTGGTAGATACACACATTCAGCAACTTGATCAATATCTGAGAAAATTTGATGAAGATATTCGGAGAGAAAGAGATGGCATTGCTGGAACAGGGTTGCCTGCTCCAATTCCTGATAGTGGAACGAAATCTGGAAGGGGTAGTGAAAGTAGTAGAGGAGGGCGTAAGAAAACACGCTTGGCCGCAGCAGCGGCTGCTGCACCAGTAACAGCAGCAGCAAACCCAACCAGTATGGATTTAGATTTACCTGTGGATCCAAATGAACCAACATATTGCATCTGTGACCAAGTTAGCTATGGGGAGATGGTTGCATGTGATAACCCTGATTGCAAGATAGAGTGGTTCCATTTTGGCTGTGTTGGTGTGAAAGAACGGCCAAAAGGAGCATGGTATTGTTCAGACTGTATTGGAATGCAAAAGCGGCGGAAAGGCAAATGA 708 43.36 MFNYSDLESLPNVLQRKYALLRDLDKSLQEIQRQNEQRCEQEIEDIKQGVKSGNITPDPSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLRKFDEDIRRERDGIAGTGLPAPIPDSGTKSGRGSESSRGGRKKTRLAAAAAAAPVTAAANPTSMDLDLPVDPNEPTYCICDQVSYGEMVACDNPDCKIEWFHFGCVGVKERPKGAWYCSDCIGMQKRRKGK* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10902339 10909796 - Vvi5g829 Vvi5g829 786971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g829 235 Gene3D - 3 104 - -
Vvi5g829 235 MobiDBLite consensus disorder prediction 116 149 - -
Vvi5g829 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 228 IPR013083 -
Vvi5g829 235 Pfam Inhibitor of growth proteins N-terminal histone-binding 6 107 IPR024610 -
Vvi5g829 235 PANTHER INHIBITOR OF GROWTH PROTEIN 4 6 156 - -
Vvi5g829 235 PANTHER INHIBITOR OF GROWTH PROTEIN 4 136 234 - -
Vvi5g829 235 ProSitePatterns Zinc finger PHD-type signature. 182 225 IPR019786 -
Vvi5g829 235 PANTHER INHIBITOR OF GROWTH PROTEIN 6 156 IPR028651 -
Vvi5g829 235 PANTHER INHIBITOR OF GROWTH PROTEIN 136 234 IPR028651 -
Vvi5g829 235 SUPERFAMILY FYVE/PHD zinc finger 166 227 IPR011011 -
Vvi5g829 235 SMART ING_2 3 107 IPR024610 -
Vvi5g829 235 CDD PHD_Yng1p_like 181 225 - -
Vvi5g829 235 SMART PHD_3 181 226 IPR001965 -
Vvi5g829 235 Coils Coil 14 41 - -
Vvi5g829 235 CDD ING_plant 7 104 - -
Vvi5g829 235 ProSiteProfiles Zinc finger PHD-type profile. 179 228 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g829 K11346 ING4; inhibitor of growth protein 4 - vvi:100266689 454.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41