Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g83 ATGGCTGCAATGGTGCTTCTTCTCGGGTTTTTATTGGCAACCCTTCAGATAACAGGAGTGAAATCAGTGGGTGTATGCTATGGAATGCTAGGCAACAATCTACCACCAGCATCACAAGTGGTAGCTCTGTATAAATCTCGCAACATCGACCGCATGAGAATCTACGATCCAAATCAAGCAGCTCTTCAAGCCCTTAGGGGCTCCAACATTCAACTCATGCTGGGAACTACTGGCCCGGCGTCATTTGTTCTGCCGGCCATGCGAAACATACGAGCAGCACTCGCATCAGCAGGCCTCCAGGACCGAGTCAAGGTCTCCACCGCAATCGACTTAACACTTCTGGGCAACTCCTACCCTCCATCTCAAGGCGCTTTCCGGGGAGATAATCTGTTCGATGCCATGCTAGATGCTCTGTACTCGGCTCTGGAGAGGGCCGGAGGGGCGTCGTTGGAGGTGGTGCTGTCGGAGAGTGGCTGGCCGTCTGCCGGGGGATTTGGGACTACGGTTGATAATGCAAGGACTTATAATTCGAATTTGATCCGCCACGTCAAAGGCGGGACTCCGAAGAGGCCAGGAAGAGCCATAGAGACTTACCTCTTTGCCATGTTTGATGAGAACAAGAAGGAGCCGCAGTTGGAGAAACATTTTGGGCTTTTCTTTCCAAACAAACAGCCGAAGTACTCTATCAACTTTTCTGGAGAAAAACCTTGGGATGTGTCTAGTGAAAATGATACAAATGAAGAATCCCTCAAGAGTGACATATAA 765 49.93 MAAMVLLLGFLLATLQITGVKSVGVCYGMLGNNLPPASQVVALYKSRNIDRMRIYDPNQAALQALRGSNIQLMLGTTGPASFVLPAMRNIRAALASAGLQDRVKVSTAIDLTLLGNSYPPSQGAFRGDNLFDAMLDALYSALERAGGASLEVVLSESGWPSAGGFGTTVDNARTYNSNLIRHVKGGTPKRPGRAIETYLFAMFDENKKEPQLEKHFGLFFPNKQPKYSINFSGEKPWDVSSENDTNEESLKSDI* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 894703 896132 - Vvi5g83 Vvi5g83 786225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g83 254 Pfam Glycosyl hydrolases family 17 79 127 IPR000490 GO:0004553|GO:0005975
Vvi5g83 254 Pfam Glycosyl hydrolases family 17 129 231 IPR000490 GO:0004553|GO:0005975
Vvi5g83 254 Pfam Glycosyl hydrolases family 17 23 76 IPR000490 GO:0004553|GO:0005975
Vvi5g83 254 ProSitePatterns Glycosyl hydrolases family 17 signature. 150 163 IPR000490 GO:0004553|GO:0005975
Vvi5g83 254 Gene3D Glycosidases 128 232 - -
Vvi5g83 254 Gene3D Glycosidases 21 77 - -
Vvi5g83 254 Gene3D Glycosidases 78 127 - -
Vvi5g83 254 PANTHER LOW QUALITY PROTEIN: GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE 80 127 - -
Vvi5g83 254 PANTHER LOW QUALITY PROTEIN: GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE 128 229 - -
Vvi5g83 254 PANTHER LOW QUALITY PROTEIN: GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE 15 75 - -
Vvi5g83 254 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 75 IPR044965 GO:0004553|GO:0005975
Vvi5g83 254 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 80 127 IPR044965 GO:0004553|GO:0005975
Vvi5g83 254 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 128 229 IPR044965 GO:0004553|GO:0005975
Vvi5g83 254 MobiDBLite consensus disorder prediction 240 254 - -
Vvi5g83 254 MobiDBLite consensus disorder prediction 231 254 - -
Vvi5g83 254 SUPERFAMILY (Trans)glycosidases 23 231 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g83 - - - vvi:100232986 414.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000510 1 2 3 2 1 3 2 3 3 4 3 3 3 2 2 4 2 6 2 3 4 1 5 6 9 3 6 6 6 9 109