Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g837 ATGCAGAGGCAGGGACAGGTTCTTGATACATCAATTGTTTCAAGAAGGAAGCTTCCATTACTAGCTTTGGTAGATTCATTTCCTTGCTGTGCTATTCTATCCAGAAGAACCATTCCATCTTCACTGAGATGTAGAGATGTATCAAGGTTGAAGTCAGTATGTGGCACAATCAGAGCCCAAGCATCCAATGTAGGTATCGGATCTGGTGGCTATGAAGGAAAGGGAGAAAATGACAACCAAAAAATCTTTGTCAATGGTCCACCCAGCGACAGTTCATCTAACATTGAGAAACCTCCCGATCGAATTCCTTATCCTCTCTCTATAGCTATTGTGTTATTTGGATGTGCCTTAGTATTTTCACTGATTATCTTTACGAAAGGAGGACCTTCATCACTTTTAGCTGCAATTGCAAAGTCGGGCTTCACTGCTGCATTCACATTGATATTTGTTTCTGAAATTGGAGATAAGACATTCTTCATTGCTGCTCTCTTGGCCATGCAATATGAGAAAGTACTGGTTCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACAATCCTGTCAGTTGTGATAGGACGGATATTTCACTCAGTGCCTGCTCAATTTCAAACAACCTTGCCAATTGGAGAATATGCAGCAGTAACTCTTTTAATGTTCTTTGGCCTCAAGTCAATAAAAGATGCATGGGACCTTCCATCAATTGTAGTTAAGAGTGGTGATAAGAGTGGACCTGAACTTGATGAATTTGTGGAGGCTGAGGAGCTTGTAAAGGAAAAGGTGTCAAAACGACTCACAAATCCACTTGAAATTGTCTGGAAGTCATTTAGCCTTGTATTCTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAATTGCTCTTGGTGCGGCACAGTCTCCATGGGGTGTGGCAAGTGGTGCCATTGCTGGACACCTATTTGCAACAACCATTGCAATTCTAGGAGGAGCATTTCTTGCCAACTACATTTCTGAGAAACTGGTTGGCTACTTGGGTGGAGCACTGTTTCTTGTTTTTGCTGTAGCCACATTTTTTGGAGTTTTCTAA 1065 41.97 MQRQGQVLDTSIVSRRKLPLLALVDSFPCCAILSRRTIPSSLRCRDVSRLKSVCGTIRAQASNVGIGSGGYEGKGENDNQKIFVNGPPSDSSSNIEKPPDRIPYPLSIAIVLFGCALVFSLIIFTKGGPSSLLAAIAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMGALSLMTILSVVIGRIFHSVPAQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSIVVKSGDKSGPELDEFVEAEELVKEKVSKRLTNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLFATTIAILGGAFLANYISEKLVGYLGGALFLVFAVATFFGVF* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11020639 11049781 - Vvi5g837 Vvi5g837 786979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g837 354 ProSitePatterns Uncharacterized protein family UPF0016 signature. 152 161 IPR001727 -
Vvi5g837 354 PANTHER PROTEIN PAM71-HOMOLOG, CHLOROPLASTIC 36 354 - -
Vvi5g837 354 MobiDBLite consensus disorder prediction 70 96 - -
Vvi5g837 354 Pfam Uncharacterized protein family UPF0016 273 346 IPR001727 -
Vvi5g837 354 Pfam Uncharacterized protein family UPF0016 143 221 IPR001727 -
Vvi5g837 354 MobiDBLite consensus disorder prediction 82 96 - -
Vvi5g837 354 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 36 354 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g837 - - - vvi:100256177 649.432
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g837 . . . . . . . . . . Cma06g01271 . Car06g01092 . . Cpe08g00377 . Bhi01g00013 . . . . . . . . . . . . . . . . Cone4ag0380 Lsi05g01803 . . Cme06g00417 . Blo07g00293 Bda11g00656 . . . . Bma06g01304 . Cmo06g01279 . . . . . . . . . . . . . . Cla05g00379 Cam05g0412 Cec05g0417 Cco05g0417 Clacu05g0408 Cmu05g0391 Cre05g0453 . Csa03g01136 Chy06g00402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010246 1 2 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32