Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g839 ATGTCAAAGAATTGCAGATCAAGGAGACTTTTCGGGGTGGGGTTTACTGGATTTTTAATTGTTGCGGCTCTTCTGGTTTGTGGTTCAGAAGGGTTGAATTCCGAGGGGCTACTCCTCCTTGAGCTGAAGCATGGGCTCTACGATCAATTTAATCATTTGTATAACTGGAATCCTAGTGATCAGACACCATGTGGGTGGATAGGTGTGAATTGCACGGGTTATGATCCAGTGGTCATCTCTCTTGATTTGAACTCGATGAATCTGTCTGGAACTCTAAGTCCTAGCATTGGTGGTTTGAGCTACCTAACTTATCTTGATGTTTCTCACAATGGGCTTACTGGAAATATACCCAAGGAGATTGGAAATTGTTCGAAGTTGGAGACACTTTGTTTGAACGATAATCAGTTTGACGGGTCAATTCCTGCTGAATTTTGTAGTTTGTCTTGTTTGACAGATTTGAATGTATGCAATAACAAATTGTCTGGTCCTTTCCCTGAAGAGATTGGGAATCTTTACGCGCTTGTTGAATTAGTGGCATACACTAACAATCTCACAGGTCCCTTGCCACGTTCTTTTGGGAATCTCAAGAGTTTGAAAACATTTCGAGCTGGGCAGAATGCTATTTCTGGAAGTCTTCCTGCAGAGATAGGTGGATGTTTTGTCCCAAAGGAACTTGGGAATTGTACGCATCTTGAAACTCTTGCTTTGTACCAGAATAATCTCGTGGGAGAGATACCCAGGGAGATTGGGAGCCTCAAGTTTTTGAAGAAGTTATACATCTATAGAAATGAGTTGAATGGTACCATTCCAAGAGAGATAGGTAATCTTTCTCAAGCCACAGAAATTGATTTCTCGGAGAACTACCTGACTGGAGGGATTCCAACTGAGTTCAGTAAGATAAAGGGTCTAAAATTACTGTATCTTTTCCAGAATGAGCTGAGTGGTGTCATTCCAAATGAGCTTAGTAGCTTGAGGAACTTGGCGAAGCTTGATCTCTCGATTAATAACCTAACAGGTCCTATTCCTGTTGGATTTCAGTATTTGACACAAATGTTCCAGTTACAGTTGTTCGACAACCGTCTGACTGGTCGTATTCCTCAAGCTCTTGGACTTTATAGCCCACTTTGGGTGGTTGATTTTTCTCAAAACCACTTGACAGGAAGCATACCTTCTCATATATGTCGACGATCTAATTTGATTTTGTTGAATCTCGAGTCTAATAAGCTGTATGGAAATATCCCAATGGGGGTCTTAAAATGTAAATCCTTGGTGCAACTTCGTCTGGTTGGAAACAGTCTTACTGGAAGCTTCCCTTTAGAGTTGTGCAGATTGGTGAACCTTTCAGCTATTGAATTGGACCAGAACAAGTTCAGTGGTCTAATTCCTCCAGAGATTGCAAACTGCAGAAGGTTACAAAGGCTTCATCTTGCAAACAATTACTTCACATCTGAGTTACCAAAGGAGATAGGGAACCTCTCCGAGTTGGTGACTTTTAATATCTCATCTAATTTTCTCACTGGACAGATTCCCCCTACGATTGTTAACTGCAAGATGCTTCAACGACTTGATCTCAGCAGGAACAGCTTTGTTGATGCTTTACCAAAAGAACTTGGGACTCTTTTGCAGTTGGAGCTTCTCAAGCTCTCCGAAAATAAATTTTCTGGAAATATACCTGCAGCATTGGGAAATCTCTCCCATTTGACAGAGTTGCAGATGGGTGGAAATTTGTTTTCAGGTGAAATACCACCAGAGTTGGGTGCTCTTTCAAGCTTGCAGATTGCAATGAATCTTAGTTATAATAATCTCTTGGGGAGAATACCACCTGAGCTTGGGAATCTTATTTTACTGGAGTTTCTACTGCTTAACAACAATCATTTGAGTGGTGAAATTCCAAGCACATTTGGAAATCTCTCAAGTTTAATGGGGTGCAACTTCTCATACAATGACCTCACTGGACCTTTACCTTCCATTCCACTGTTTCAGAACATGGTTAGCAGCAGTTTTATTGGAAATGAAGGCCTCTGTGGTGGGCGTCTTAGCAATTGCAATGGAACTCCATCTTTTAGTTCTGTTCCACCTTCTTTGGAGAGTGTGGATGCTCCTCGGGGTAAAATCATCACAGTAGTTGCAGCTGTTGTAGGTGGGATCTCTCTCATTCTGATTGAGGGTTTCACTTTCCAAGATCTAGTTGAGGCCACAAACAATTTTCATGACAGCTACGTGGTTGGAAGGGGGGCTTGTGGAACTGTTTATAAGGCAGTTATGCATTCTGGGCAAACCATTGCAGTTAAGAAGCTTGCCTCTAACAGGGAAGGAAACAGCATTGACAACAGTTTCCGAGCTGAAATTCTCACACTGGGAAAGATTAGGCATCGTAATATCGTGAAGCTCTATGGTTTTTGCTATCACCAGGGTTCCAATCTGCTTCTGTATGAGTACATGGCAAGGGGTAGTTTGGGTGAGTTGCTTCATGGGGCATCTTGTAGCTTGGAATGGCAAACCCGGTTCACTATTGCTCTTGGGGCTGCTGAAGGTCTTGCTTATTTACATCATGACTGCAAACCAAGGATCATTCACCGTGATATAAAATCTAATAATATTCTACTTGACAGTAATTTTGAAGCTCATGTTGGTGATTTTGGTTTGGCAAAGGTTGTGGACATGCCTCAATCTAAATCAATGTCAGCTGTTGCTGGATCATACGGATACATTGCCCCTGAATATGCTTACACTATGAAGGTTACAGAGAAATGCGACATATATAGCTATGGGGTTGTTCTATTGGAGCTGTTAACAGGGAGAACTCCTGTACAGCCACTAGATCAAGGGGGCGATCTTGTCTCATGGGTGAGGAATTATATTCGGGACCATTCATTGACATCTGAGATATTTGACACTCGTTTAAATCTAGAAGACGAAAATACTGTTGATCACATGATTGCTGTCTTAAAAATTGCTATACTGTGCACAAATATGTCCCCTCCTGACCGGCCTTCAATGCGGGAAGTTGTGCTGATGCTGATTGAGTCTAATGAGCATGAGGGGTACTATATCTCATCTCCAATCAATGATCTTCCTCTGAAAGATGATTCATCATGA 3099 41.79 MSKNCRSRRLFGVGFTGFLIVAALLVCGSEGLNSEGLLLLELKHGLYDQFNHLYNWNPSDQTPCGWIGVNCTGYDPVVISLDLNSMNLSGTLSPSIGGLSYLTYLDVSHNGLTGNIPKEIGNCSKLETLCLNDNQFDGSIPAEFCSLSCLTDLNVCNNKLSGPFPEEIGNLYALVELVAYTNNLTGPLPRSFGNLKSLKTFRAGQNAISGSLPAEIGGCFVPKELGNCTHLETLALYQNNLVGEIPREIGSLKFLKKLYIYRNELNGTIPREIGNLSQATEIDFSENYLTGGIPTEFSKIKGLKLLYLFQNELSGVIPNELSSLRNLAKLDLSINNLTGPIPVGFQYLTQMFQLQLFDNRLTGRIPQALGLYSPLWVVDFSQNHLTGSIPSHICRRSNLILLNLESNKLYGNIPMGVLKCKSLVQLRLVGNSLTGSFPLELCRLVNLSAIELDQNKFSGLIPPEIANCRRLQRLHLANNYFTSELPKEIGNLSELVTFNISSNFLTGQIPPTIVNCKMLQRLDLSRNSFVDALPKELGTLLQLELLKLSENKFSGNIPAALGNLSHLTELQMGGNLFSGEIPPELGALSSLQIAMNLSYNNLLGRIPPELGNLILLEFLLLNNNHLSGEIPSTFGNLSSLMGCNFSYNDLTGPLPSIPLFQNMVSSSFIGNEGLCGGRLSNCNGTPSFSSVPPSLESVDAPRGKIITVVAAVVGGISLILIEGFTFQDLVEATNNFHDSYVVGRGACGTVYKAVMHSGQTIAVKKLASNREGNSIDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMARGSLGELLHGASCSLEWQTRFTIALGAAEGLAYLHHDCKPRIIHRDIKSNNILLDSNFEAHVGDFGLAKVVDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLDQGGDLVSWVRNYIRDHSLTSEIFDTRLNLEDENTVDHMIAVLKIAILCTNMSPPDRPSMREVVLMLIESNEHEGYYISSPINDLPLKDDSS* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11135152 11141461 + Vvi5g839 Vvi5g839 786981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g839 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 857 869 IPR008271 GO:0004672|GO:0006468
Vvi5g839 1032 SMART serkin_6 736 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g839 1032 Gene3D Phosphorylase Kinase; domain 1 716 813 - -
Vvi5g839 1032 Gene3D Ribonuclease Inhibitor 375 685 IPR032675 -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 147 217 - -
Vvi5g839 1032 Gene3D Ribonuclease Inhibitor 220 372 IPR032675 -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 220 721 - -
Vvi5g839 1032 ProSiteProfiles Protein kinase domain profile. 736 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g839 1032 Gene3D Ribonuclease Inhibitor 36 145 IPR032675 -
Vvi5g839 1032 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Vvi5g839 1032 Gene3D Ribonuclease Inhibitor 146 219 IPR032675 -
Vvi5g839 1032 SUPERFAMILY L domain-like 47 370 - -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 147 217 - -
Vvi5g839 1032 SUPERFAMILY Protein kinase-like (PK-like) 719 1007 IPR011009 -
Vvi5g839 1032 SUPERFAMILY L domain-like 419 680 - -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 166 - -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 722 1018 - -
Vvi5g839 1032 Pfam Protein kinase domain 737 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 220 721 - -
Vvi5g839 1032 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 166 - -
Vvi5g839 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 722 1018 - -
Vvi5g839 1032 Gene3D Transferase(Phosphotransferase) domain 1 814 1020 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g839 - - - vvi:100245888 1847.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001136 3 4 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 1 1 2 2 1 0 1 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76681 PF00069 Pkinase 2.10E-49 CL0016 Vvi PK