Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g84 ATGGCTCTTCAGAAATACATTCCTTCTGGTGATGCACCTTCTGTTAGTATGAAACCTTTGAGTTTTTCCAGTAAGGTTCAGGAGAAAGTTCAACTTGCTGATCCGGAGGGAAGTCCTACCATGGATGCTGATGTGGATATTGACCTTAGAGAAGTTTATTTTTTAATTATGCATTTTCTATCAGCTGGACCATGTCATAGAACCTATGGGCAGTTCTGGAATGAACTTCTTGAACATCAACTTTTACCTAGAAGATACCATGCTTGGTATTCAAGGAGTGGCTTGCGCAGTGGGGATGAAAATGATGACGGATCATCTTTTCCATTAAGTTATAATAAGTTGGTGGAGAGGTACCCTCATATTGGGAAGGATCATTTGGTAAAGCTCTTGAAGCAACTGATACTGAGCACTACCCATCCATCACAAGGCATGATTCGTGGAAATGTGCCAAATGCAGCTGATGTTCCTACCCTTCTAGGAACGGGCTCCTTTTCACTTTTGGGCAATGATATGGACAAAGGACACAACGAGGTGAATCCTCCTCCTATTCACATGCGTTGGCCTCATATGCAAGCTGATCAGGTCCGGGGGCTAAGTTTGAGGGAAATTGGAGGTGGTTTTACAAGGCATAATCGAGCACCATCTATTCGTGCGGCATGTTATGCTGTTGCAAAGCCATCAACTATGGTACAAAAGATGCAAAATATTAAGAAGCTAAGGGGACACAGGAATGCTGTTTATTGTGCCATTTTTGATCGGACAGGCAGATATGTTATTACAGGTTCAGATGACCGCCTTGTGAAGATCTGGTCAATGGAAACAGCATATTGCTTGGCCAGCTGCCGTGGACATGAAGGTGATATTACTGACTTGGCTGTGAGTTCTAACAATGCTTTGGTGGCATCCTCTTCAAATGACTGCATCATTCGAGTTTGGCGTTTGCCAGATGGACTACCAATTTCAGTTTTACGTGGACATACTGGAGCTGTTACAGCTATTGCTTTTAGTCCTAGACCAAGCTCTGTATACCAACTATTATCGTCATCTGATGATGGAACATGTAGGATATGGGATGCTAGGTACTCCCAATTCAGTCCGCGAATATACGTTCCAAGGCCTCCAGATTCTATAGCTGGAAAGAACAATGTTCCATCCTCAAGTAATGGTCCCCAAAGCCATCAAATATTTTGTTGCGCATTCAATGCTAATGGAACTGTCTTTGTCACTGGTAGCTCAGACACTCTTGCAAGGGTCTGGAATGCTTGTAAATCCAACCCTGATGAATCTGACCAACCAAATCATGAGATGGATATATTATCTGGACATGAAAATGATGTTAATTATGTGCAATTCAGTGGTTGTGCTGTATCATCTAGATTTTCCGTGGCTGAATCCTCGAAGGAAGAGAATGTTCCAAAATTCAAAAATTCCTGGTTTACTCATGATAATATAGTCACCTGTTCTCGGGATGGCAGTGCAATTATATGGATTCCAAGATCACGCAGATCACATGGAAAGGTTGGTCGTTGGACACGGGCGTATCATCTCAAAGTTCCACCTCCACCAATGCCTCCTCAACCCCCACGAGGAGGTCCGCGTCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATTGTGTGGAGCCTGGACAATCGCTTTGTCCTTGCTGCTATTATGGATTGCAGAATATGCGTCTGGAATGCTGTTGATGGTAGTTTGGTACATTCTTTGACAGGTCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAACCCCCGGATTGCCATGAGTGCTGGCTACGATGGGAAAACCATAGTGTGGGATATATGGGAAGGCACACCTATCCGGATCTATGACACTGCACGTTTCAAGTTGGTTGATGGGAAGTTTTCACCGGATGGAACGTCAATTATACTCTCTGATGATGTTGGTCAACTATATATATTAAGTACGGGTCAAGGCGAGTCCCAAAAGGATGCTATGTATGATCAGTTCTTCCTCGGGGATTATCGTCCTCTTATACAGGATACATATGGAAATGTCCTTGACCAGGAAACTCAGCTTGCACCATATCGGAGGAATATGCAAGATCTGCTTTGTGATGCAACCATGATACCATACCCAGAACCCTATCAGAGCATGTATCAGCAGCGGCGATTAGGAGCTCTGGGAATTGAATGGCGTCCTTCCTCACTGAGATTGGCTGTTGGGCCAGATTTCAATCTGGACCAAGATTACCAAATGTTACCATTGCCTGACTTGGATGTATTGATTGATCCATTACCAGAATTTATAGATGTCATGGATTGGGAACCTGAAAATGAAGTGCAAACTGATGATACTGATTCAGAGTATAATGTTACTGAGGAGTATTCTACTGGAGGGGAACAAGGAAGCTTAAGTTCCAATTCCTCTGGTGATCCAGAGTGCAGTGCAGAAGATAGTGATGTTGAGAACTCTCATAAAGATGGCCTCCGCAGATCAAAAAGGAAAAAGCAGAAGGCAGAAACTGAGATCATGACTTTTTCTGGGAGGCGAGTTAAAAGGAGAAATTTAGATGAGTTTGATGGTAATTCACTCAGAAGTAACAGGACTAGAAAATCAAGAAGTGGCCGAAAAGTTTCCCACAAAAATTCTTCTAAATCGAAGTCATTGAGACCTCAGAGAGCTGCTGCTCGCAATGCTCTTACTTTGTTTTCCCGAATGAAAGGAACATCTACAGATGGAGAAGATGAAGATGGCTCTGAAGGTGATTTGTCAGAAAGTGAATCCTCACTGGAAGATTCTAACATTGAGAGTGATGAATCCGATGGTTCTTTGCAAAATGAGCAATGCAAACATTCAAAAGGAAAAGAAGTATCCTTGGATGAGTTTGAAGATATGGATAAACAGCATGAGCATCCTGAATCTTGTATGAATGCGGGAAACAGAAGGAGATTGGTCCTTAAATTCCCAATTCGTGATTCAAATAGACTTTTGTTGGCTCCAGAGAACCAGGCTGATTTAGTGGGGTCATCATCTAAAGCTCCTCAGGAAGCCTCTGAAAGGGGGCAACCTGAAAAGATTGAAGATCATTTAGACCTGTTTGAAGGATACAAGGATGGGAAAATTAGATGGGGAGGAGTCAAGGCTCGCACATCCAAACGTCTGAGGGTGGTGGAACCCATGCCTTCAGACACTGACGCTAGATCTAGACAATGCATTGATGGTCATGATGCAACTGAAAACACTATCAATGGATTCCAAGAACCTGAAAAGAATTATGACAGAATATCCCCTCATTCAGAAATCAAATATCATCACTCTAGCTTCAATGAGTGCATGAATTATGATGAACCACCAAAACAGGTGAACATGGTTGCTGGTGACACAGCTGCATCTTCTGTCCAGCATTCTAATGGGACTGACCACCCTCCTCATTTGAAAGAGAGCTCTACATCATCGACAAAGTTAAGGATAAGGTCAAAAAAGATTTTAGAAGATCCTGAAATTCCTTCTGATCCAAAAATTAAATCTTCAGTAGAAGATTGGAGCAATGGCATGGATTTCCATGAAGCAACAACTGATGGGGCTCGTAGGACACGGCTAGGCCATGGATCAGAAGATACATTAAAAAGTGTCGATAAGTTTTCTGTGAATAGATCTGATGAACTTCCATGTGAAGAATGGATGTCAAGTTCTAGGATGACAGTTGGGCTGAGATCTGCTAGAAACAGGAGGGCCAGTTATCATGTTCGTGATACAAGTCCAAGTCCAATGGAGAGACGGAAGCCACATCAATCATCAAAAAAGGTGTCTTGGTTGATGTTGTCAATGCATGTGGAACCCCGATATATCCCCCAGCTGGGTGATGAAGTTGTATATCTGAGACAGGGCCATCAGGAGTATATAACTTATAGTGGCTCACATGAAGCAGGCCCTTGGACATCAGTCAAGGGAATCATAAGAGCTGTAGAATTTTGTAAAGTTGAAGGCCTTGAATATTCTCCATTTGCAGGTTCTGGTGATAGCTGCTGTAAAATGACACTTCAATTTGTAGATCCTACTTCCCATGTGTTTGGTAAAACATTCAAGTTGACCCTGCCTGAAGTGACCAGCTTCCCAGACTTTCTTGTTGAAAGAACTCGGTATGATGCTGCTATCCAGAGGAATTGGACTTCTAGGGACAAGTGCCGAGTCTGGTGGAAAAACGAGGGTGAGGAAGATGGGAGTTGGTGGGATGGACGGATCTTATCTGTGAAGGCCAGATCTCCTGAATTCCCAGACAGTCCATGGGATAGATATGTTATTCGGTACAGGAGTGAACCAACAGAAACACATCTGCACAGTCCGTGGGAACTTTATGACATTGGTACTCAGTGGGAGCAGCCTCATATTGATGATGAGAGCAGAAACAAACTATTATCTTCACTTGCCAAATTAGAACAGTCGGGAGACAAACCTCAGGACTACTATGGGATTCAAAAACTGAAACAAGTCTCACAGAAGTCAAATTTTTTGAACAGGTTTCCGGTTCCGCTGTCTCTTGAAGTGATCCAATCAAGGTTAAAGAACCAGTATTACAGAAGTATGGAGGCAGTGAAGCATGATGTCAAGGTCATGCTATCAAATGCTGAAACATACTTTGTAAAAAATGCGGAGCTTTCAATGAAAGTGAGGCGCCTATCAGAGTGGTTTACACGGATGCTTTCATCTATATAA 4710 42.78 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFLSAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPHIGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNPPPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDARYSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAETEIMTFSGRRVKRRNLDEFDGNSLRSNRTRKSRSGRKVSHKNSSKSKSLRPQRAAARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPENQADLVGSSSKAPQEASERGQPEKIEDHLDLFEGYKDGKIRWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEIKYHHSSFNECMNYDEPPKQVNMVAGDTAASSVQHSNGTDHPPHLKESSTSSTKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGMDFHEATTDGARRTRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSSRMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVEPRYIPQLGDEVVYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTLQFVDPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDGSWWDGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDESRNKLLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRSMEAVKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI* 1570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 901140 927705 + Vvi5g84 Vvi5g84 786226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g84 1569 Gene3D - 218 368 IPR015943 GO:0005515
Vvi5g84 1569 SMART WD40_4 432 497 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 380 420 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 316 358 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 232 271 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 274 313 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 571 611 IPR001680 GO:0005515
Vvi5g84 1569 SMART WD40_4 530 568 IPR001680 GO:0005515
Vvi5g84 1569 CDD WD40 235 611 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 1127 1178 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 1000 1025 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Vvi5g84 1569 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 9 1000 - -
Vvi5g84 1569 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 1196 1568 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 1127 1149 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 817 866 - -
Vvi5g84 1569 CDD Bromo_WDR9_I_like 1441 1568 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 914 937 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Vvi5g84 1569 Pfam Bromodomain 1498 1550 IPR001487 GO:0005515
Vvi5g84 1569 Gene3D - 389 455 IPR015943 GO:0005515
Vvi5g84 1569 MobiDBLite consensus disorder prediction 777 958 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 314 - -
Vvi5g84 1569 PANTHER WD REPEAT DOMAIN 9 9 1000 - -
Vvi5g84 1569 PANTHER WD REPEAT DOMAIN 9 1196 1568 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 868 886 - -
Vvi5g84 1569 Gene3D - 1461 1569 IPR036427 GO:0005515
Vvi5g84 1569 Pfam WD domain, G-beta repeat 392 420 IPR001680 GO:0005515
Vvi5g84 1569 Pfam WD domain, G-beta repeat 319 358 IPR001680 GO:0005515
Vvi5g84 1569 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Vvi5g84 1569 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Vvi5g84 1569 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 620 IPR001680 GO:0005515
Vvi5g84 1569 Gene3D - 465 668 IPR015943 GO:0005515
Vvi5g84 1569 SUPERFAMILY WD40 repeat-like 230 654 IPR036322 GO:0005515
Vvi5g84 1569 MobiDBLite consensus disorder prediction 790 813 - -
Vvi5g84 1569 MobiDBLite consensus disorder prediction 942 958 - -
Vvi5g84 1569 SUPERFAMILY Bromodomain 1500 1568 IPR036427 GO:0005515
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 274 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 358 IPR001680 GO:0005515
Vvi5g84 1569 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Vvi5g84 1569 ProSiteProfiles Bromodomain profile. 1509 1552 IPR001487 GO:0005515
Vvi5g84 1569 MobiDBLite consensus disorder prediction 1150 1173 - -
Vvi5g84 1569 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Vvi5g84 1569 SMART bromo_6 1460 1568 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g84 K11797 PHIP, DCAF14; PH-interacting protein - vvi:100248159 2285.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g84 Vvi7g389 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41