Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g842 ATGAAGTGTGTGTTTTTGAGTTTTGAGTTGAAAGCAAGCAAAGAGAGAACAGAGAGAAGGGAGAGAGAGGAAGCAGAACCCAATGATGCAAACCCGAGAAGAAAGGTTTGGAAATTGAGGCAAATGTCGATGCCCAGCTCGAGGCAACCCTACAACTTCTCATCATTCTTGGTCACTCCGCCACCTCTCTTCCTTTCCTTCTTCTTCCTTGGTCTTCTCACAGCCCCCGTCTTCGCCGTTGACAACCATGAGGCCTTTCTTCTCTTCTCGTGGCTGCATAGCACCCCTTCACCAGCCACCTCATCTTTACCAGACTGGAACATAAATGACGCCACCCCTTGTAACTGGACTTCCATAGTTTGCTCTCCCCGAGGTTTTGTAACCGAAATCAATATACAGTCTGTCCATCTCGAGCTCCCTATACCATCAAATCTCTCTTCCTTCCAATTTCTTCAGAAGCTCGTCATTTCAGATGCCAATATTACTGGAACCATCCCTCCTGAGATCGTTGGCTGCACGGCACTTAGAATCATCGACCTTAGTTCCAACAGTCTTGTTGGTACCATCCCAGCAAGCCTAGGTAAGCTTCAGAAGCTTGAGGACTTGGTTTTGAATTCCAATCAGCTCACTGGGAAAATCCCAGTTGAGCTTAGCAACTGCCTTAATCTTAGGAATCTCCTCCTCTTTGATAATCAAATTACTGGGAAAATCCCTGCAGAGCTCGGAGAATGCAGCAACCTGACTGTGCTGGGGCTGGCTGATACCCAAGTTTCAGGATCCTTACCCGCCTCATTGGGTAAGCTTAGCAGACTTCAGACATTGTCCATATATACTACTATGCTGTCTGGTGAAATTCCTCCTGATATAGGTAACTGTTCTGAGCTTGTAAATTTATACCTTTATGAAAACAGTCTCTCTGGTTCAGTTCCGCCAGAGCTTGGTAAGCTTCAGAAGCTTCAAACCCTCTTGCTATGGCAGAATACTCTCGTTGGTGTCATCCCAGAAGAGATTGGGAATTGTAGTAGCTTGCAAATGATTGATCTCTCTTTGAATTCTTTATCTGGAACCATACCACCATCTCTTGGGGACCTTTCAGAGCTTCAAGAGTTCATGATTAGCAATAACAATCTGGAAGGAAGCATTCCTTCTACTTTGGCTAATTGTAGAAACCTCCAAGTACTGGACTTGTCTCACAATTCGCTTACTGGTACCATTCCTTCTGGCTTGTTTCAGCTTCAAAACCTCACAAAACTGCTCTTGATTTCCAATGATATTTCGGGTACCATACCTCCAGAAATTGGTAATTGCAGTTCTCTTGTGCGGATGCGGCTTGGAAACAACCGGATTACCGGTGGGATCCCAAGACAAATTGGTGGACTCAAGAACTTAAATTTTCTTGATCTGTCTAGAAATCGCCTTTCAGGGTCAGTGCCAGATGAGATTGAAAGTTGCACAGAATTGCAGATGGTAGACCTCAGCAACAATATTCTAGAAGGGCCCCTGCCTAATTCACTGTCCTCTCTATCTGGTCTCCAAGTCTTGGATGTTTCAGTGAACCGATTAACGGGCCAGATTCCAGCAAGTTTTGGTCGTCTAGTTTCATTAAACAAGCTCATTCTAAGCAGAAATTCTTTATCTGGATCAATACCTCCTTCACTGGGCCTCTGTTCAAGTCTCCAATTGCTTGATCTCAGCAGCAATGAGCTCTTTGGCAGCATACCCATGGAACTTTCTCAGATTGAGGCCCTGGAGATTGCTCTCAACCTCAGTTGCAATGGGCTCACTGGGCCAATCCCAACTCAAATATCTGCACTCAACAAGCTTTCCATACTGGATCTTTCGCACAACAAGCTTGAGGGGAATTTGATTCCGCTCGCCAAGCTTGACAATCTTGTTTCTCTAAACATCTCTTACAATAATTTCACTGGTTATCTTCCAGACAACAAGCTCTTCCGACAGTTACCAGCCATAGACCTAGCTGGAAACCAAGGGCTTTGCTCTTGGGGCAGGGACTCATGCTTCTTGAATGATGTGACTGTTCGTGATTCCTTCTCTGCAGAGGTTAAGACTCTTGGCTCAATCCGTCATAAGAACATTGTTAGGTTCTTGGGCTGTTGTTGGAATCGAAACACAAGATTGCTCATGTATGATTACATGCCCAATGGAAGCTTGGGTAGTCTCCTACATGAGAAGGCAGGAAATTCCCTCGAATGGGGACTACGGTACCAGATTTTGTTGGGGGCGGCACAAGGCCTTGCTTATTTACACCATGATTGTGTTCCGCCCATTGTCCACAGGGACATCAAGGCCAACAACATTCTCATTGGTCTTGAATTTGAGCCTTATATTGCTGATTTTGGCCTTGCTAAGCTCGTCAATGATGCAGATTTTGCTAGATCCTCTAATACGGTTGCTGGCTCCTATGGATATATTGCTCCTGAATATGGTTACATGATGAAGATCACAGAGAAGAGCGATGTTTACAGCTACGGAATTGTTGTATTGGAAGTTTTGACAGGGAAGCAACCAATTGACCCAACAATACCAGATGGTCTCCACGTGGTGGACTGGGTGAGACAGAAGAAGGGAGGAGTTGAAGTCCTTGACCCAAGTTTACTATGTCGACCTGAATCTGAAGTGGATGAAATGATGCAAGCATTAGGCATAGCCTTACTATGTGTAAACTCATCCCCTGATGAAAGGCCTACTATGAAAGACGTGGCAGCAATGCTCAAGGAGATCAAACATGAGAGAGAGGACTATGCAAAGGTTGATGTGCTCCTCAAGGGATTTCCAGCAACAGATATTCAAGACAATAAGAGCTCCAGTGGAGCTCCTGCAACGTCATCATCAACGCCAACAACACAAAGCTTGTACCCAAAAAGCAATAACACAAGCTTTTCTGCATCCTCACTACTTTATTCATCTTCATCTAATGGCAAAATGGGGTTCAATTGA 2958 44.86 MKCVFLSFELKASKERTERREREEAEPNDANPRRKVWKLRQMSMPSSRQPYNFSSFLVTPPPLFLSFFFLGLLTAPVFAVDNHEAFLLFSWLHSTPSPATSSLPDWNINDATPCNWTSIVCSPRGFVTEINIQSVHLELPIPSNLSSFQFLQKLVISDANITGTIPPEIVGCTALRIIDLSSNSLVGTIPASLGKLQKLEDLVLNSNQLTGKIPVELSNCLNLRNLLLFDNQITGKIPAELGECSNLTVLGLADTQVSGSLPASLGKLSRLQTLSIYTTMLSGEIPPDIGNCSELVNLYLYENSLSGSVPPELGKLQKLQTLLLWQNTLVGVIPEEIGNCSSLQMIDLSLNSLSGTIPPSLGDLSELQEFMISNNNLEGSIPSTLANCRNLQVLDLSHNSLTGTIPSGLFQLQNLTKLLLISNDISGTIPPEIGNCSSLVRMRLGNNRITGGIPRQIGGLKNLNFLDLSRNRLSGSVPDEIESCTELQMVDLSNNILEGPLPNSLSSLSGLQVLDVSVNRLTGQIPASFGRLVSLNKLILSRNSLSGSIPPSLGLCSSLQLLDLSSNELFGSIPMELSQIEALEIALNLSCNGLTGPIPTQISALNKLSILDLSHNKLEGNLIPLAKLDNLVSLNISYNNFTGYLPDNKLFRQLPAIDLAGNQGLCSWGRDSCFLNDVTVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEKAGNSLEWGLRYQILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVNDADFARSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHVVDWVRQKKGGVEVLDPSLLCRPESEVDEMMQALGIALLCVNSSPDERPTMKDVAAMLKEIKHEREDYAKVDVLLKGFPATDIQDNKSSSGAPATSSSTPTTQSLYPKSNNTSFSASSLLYSSSSNGKMGFN* 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11311928 11315630 - Vvi5g842 Vvi5g842 786984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g842 985 Pfam Protein tyrosine and serine/threonine kinase 681 910 IPR001245 GO:0004672|GO:0006468
Vvi5g842 985 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 239 392 - -
Vvi5g842 985 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 68 240 - -
Vvi5g842 985 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 679 978 - -
Vvi5g842 985 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 390 679 - -
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 501 585 IPR032675 -
Vvi5g842 985 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Vvi5g842 985 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Vvi5g842 985 Pfam Leucine rich repeat 438 495 IPR001611 GO:0005515
Vvi5g842 985 Pfam Leucine rich repeat 174 233 IPR001611 GO:0005515
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 586 672 IPR032675 -
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 83 240 IPR032675 -
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 405 500 IPR032675 -
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 312 404 IPR032675 -
Vvi5g842 985 Gene3D Phosphorylase Kinase; domain 1 674 719 - -
Vvi5g842 985 Gene3D Ribonuclease Inhibitor 242 311 IPR032675 -
Vvi5g842 985 SUPERFAMILY RNI-like 331 666 - -
Vvi5g842 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Vvi5g842 985 SUPERFAMILY Protein kinase-like (PK-like) 677 936 IPR011009 -
Vvi5g842 985 ProSiteProfiles Leucine-rich repeat profile. 390 412 IPR001611 GO:0005515
Vvi5g842 985 Gene3D Transferase(Phosphotransferase) domain 1 720 929 - -
Vvi5g842 985 SUPERFAMILY RNI-like 130 426 - -
Vvi5g842 985 MobiDBLite consensus disorder prediction 935 963 - -
Vvi5g842 985 SMART serkin_6 660 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g842 985 ProSiteProfiles Protein kinase domain profile. 559 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g842 985 SMART LRR_typ_2 364 388 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 196 220 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 316 340 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 389 412 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 532 556 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 508 531 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 628 653 IPR003591 -
Vvi5g842 985 SMART LRR_typ_2 460 484 IPR003591 -
Vvi5g842 985 MobiDBLite consensus disorder prediction 14 34 - -
Vvi5g842 985 ProSiteProfiles Leucine-rich repeat profile. 607 629 IPR001611 GO:0005515
Vvi5g842 985 PRINTS Leucine-rich repeat signature 391 404 - -
Vvi5g842 985 PRINTS Leucine-rich repeat signature 605 618 - -
Vvi5g842 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 239 392 - -
Vvi5g842 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 68 240 - -
Vvi5g842 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 390 679 - -
Vvi5g842 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 679 978 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76682 PF07714 PK_Tyr_Ser-Thr 3.20E-38 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g842 - - vvi:100266591 941.414