Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g849 ATGAACTATGTGATAGATCACGGGTGGGCGTTTTATTGGGGGACCAGTGAGTGGTCTGCCCAGCAGATCACGGAGGCCTGGGGGGTGGCGGAGCGCTTGGATCTGGTCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGACTGAAGCCAATTGCAGACGAACTAGGTGTACCTTTGTCTCAACTTGCAATTGCTTGGTGTGCTGCAAATCCGAATGTCTCATCAGTTATTACTGGGGCGACAAAGGAGTCTCAGATTCAAGAGAATATGAAGGCTATTGATGTCATACCTCTGCTGACACCTACTGTGCTGGAGAAGATTGAGGCCGTTGTTCAAAGCAAGCCAAAGCGACCTGATTCATATAGGTGA 579 47.84 MNYVIDHGWAFYWGTSEWSAQQITEAWGVAERLDLVGPIVEQPEYNLLSRHKVECEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGTIPQDSRFALENYKNLASRSLVDDVLRKVNGLKPIADELGVPLSQLAIAWCAANPNVSSVITGATKESQIQENMKAIDVIPLLTPTVLEKIEAVVQSKPKRPDSYR* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11503638 11518716 + Vvi5g849 Vvi5g849 786991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g849 192 PANTHER BNAA08G28020D PROTEIN 1 192 - -
Vvi5g849 192 PANTHER HYPERKINETIC, ISOFORM M 1 192 IPR005399 -
Vvi5g849 192 Pfam Aldo/keto reductase family 5 179 IPR023210 -
Vvi5g849 192 SUPERFAMILY NAD(P)-linked oxidoreductase 1 189 IPR036812 -
Vvi5g849 192 Gene3D - 1 187 IPR036812 -
Vvi5g849 192 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 25 44 IPR005399 -
Vvi5g849 192 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 70 76 IPR005399 -
Vvi5g849 192 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 122 134 IPR005399 -
Vvi5g849 192 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 135 148 IPR005399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g849 - - - vvi:100263047 392.119
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g849 . . . . . Bpe14g01296 . . . . . . . Car14g01676 Sed02g1471 . Cpe03g01572 Bhi01g00060 Tan10g0556 Cmetu06g1480 . . . Lcy11g1747 . . . . . . . . . . Cone4ag0385 Lsi05g01815 . . Cme06g00408 . . . Bda13g00025 . . Bma02g01213 . . . Cmo14g01921 . . . . . . . . . . . . . Cla05g00370 Cam05g0403 Cec05g0408 Cco05g0408 Clacu05g0398 Cmu05g0383 Cre05g0445 . Csa03g01126 Chy06g00392 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010593 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 2 1 32