Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g850 ATGACAGGTGAGACTTCTGGTTTTTCAGGCCAACACTTCTGTAATAACCCAGATAATGCTGTGTCAAGTGGTCAGTTGGCCGCAGACAGAAATGCACATGATATCTGTGCACAGACAGGTGAGGAATTTTCTGCTGAGTTCCTTCGTGATCGTGTTGCTCCAAGAAGGGCGTCTGCCATGATTGATACAGATCAGAGACAGCCAAAGGGATGGTGTAAAGGTTTTAATGAGAATCATCAGATGGTTTATGAGCCCCTCAATGGCATTCTTGGGCTAAGGAGAGGGGATTCTGAATGCAGCTCTGACATCTTGGATTTTTCCCCTCAACCACATCATTGTCAAGGGTCAGGAGTTTCAGATGCTTCTTTCTCTGACAAGATGAAATTCCTTTGCAGCTTTGGGGGGAGGATATTACCAAGGCCAAATGATGGGAAGCTTAGATATGTGGGTGGAGAGACAAAGATTATATCCATCAGGAAAAACCTCTCTTGGGTTGAACTTGTGAAGAAAACTTCTGCTATTTGCAACCAACTTCATACAATCAAGTATCAGCTCCCAGGTGAGGATCTTGATGCACTCATATCTGTTTCTTCAGATGAAGATCTTCATCATATGATCGAGGAGTATCATGAGCTGGAAAGAATTGAGGGTTCTCAAAGACTAAGGATATTTCTTGTACCGGTGGGTGAACCTGAGAGCCCTAGTTCTTTCGAAACAAGGGCCACACAACAGAATGAAGCTGATTATCAGTATGTTGTTGCTGTGAATGGCATGCTTGACCCAAGTCCACGGAAGAACTCTAGTGGGCAGAGTGTATCAAGCCAGACGGGAAATACCTGTGATTATAGAGACCCTCCTTTTTTTCATCCTTTGGAGATGAAGGATGGAGCTAGTTCCTCAAATTTGGTGGGGATGTTCACAAATCCTGCTGCTCAGTTTTTGACTTCACTCCAGATACCAACCAAGTCATTTCAGCAATCTCCTCCTGTATCTCCATTGCCAGTTCAGAATAGAGATCCTCAGAATTCTGCAATGCATTTCTTCGAGGATCATGCATACCATGATGGTCATGAAAGCGCCAGTCAATTTGTCACAGATCAATGGCCATGTGACAACGCCTATTGTGTTGATTCTCCCAGCTATTATCATAATAATCCGCCTGTGCTTAAGGAGAGAGCATTCCACTCTCATCCCAAAGATCCACTGGGTCTTCTGTCAGGATCAACTAATGATTTGGTAGGTTCTCATCACCGGATGTTGCATAAATACCAAGAAGCTTATCAGAATCAGCCCACTCTCATAGTGGATGACCACAAGGGAAATAATGGACTGGGTCAAGATACATGGAACTGGGAGGATGAGATAGATACTCAGGTAGGTCAGGAAAGGAAACATGATAAAGTAATCACTGACCTTACATCACAAGATAATTCCACACTACCTAATACAAAGTTGCAAAATGTTTGTTACAACCCAAATTCAGTACCCAGTATTCATATTTCCCCACTTGAGTTTCAAGACCATGGAGACACAACTATGAATTCTGCTTCAACACTCATGATTCCAGAAAATTCTGCTGATATTGTGAGAGAGCAGCCTCATGATTACTCATTGGGTGCAAGTACACCCAAGTTTCTCGTCAAAAGCCAAAATGCTACCAAGGACATGCAGCATGCTATGACTGAGGTAATAAGTAAGTCTTCATTTGAAAATCCTGACAAGAAAGCTCCCTCAGATAATCATCATAACGGCAACACACCAGGTGCTGCAGTTATTGTTGAAGATGTAACTGATATTTTGCCTCCTGGCATTCCCTCATCTTCCCCACTTATCCCACAAGTAGAAGATGAAGCGAGTGATGTAATTACATCATCTGGAGAAGCAGAGGCAGAGAGTGATATTCAAGAATCTGAAGGGGAGGAGGGCAGAGATCTGGGTGAATCTATTAGCGATGCTGCTATGGCTGAAATGGAGGCAAGCATCTATGGTTTGCAGATAATAAAGAATGCTGATCTTGAAGAGCTGAAAGAGTTGGGATCTGGTACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCATCTGAGCAAGAGCGGTTGACTAAAGACTTCTGGAGAGAGGCTCGGATCCTATCAAATCTTCACCATCCAAATGTGGTAGCATTTTATGGGGTGGTTCCTGATGGGCCTGGAGGAACATTGGCAACTGTAACTGAATATATGGTAAATGGATCATTGAGGCATGTCCTACTAAGGAAGGATAGATCTCTTGATCGCCGGAAAAGGCTTATAATTGCAATGGATGCAGCTTTTGGCATGGAATACTTGCATTTGAAAAACATTGTTCACTTTGATTTGAAATGCGACAATTTGCTCGTCAATATGAGGGACACTCAACGGCCAATATGCAAGGTTGGAGATTTTGGATTATCGAGAATTAAACGCAATACACTTGTATCGGGTGGTGTTCGAGGAACCCTTCCATGGATGGCACCAGAATTATTGAATGGTAGCAGTAACCGGGTTTCGGAGAAGGTTGACGTTTTCTCATTTGGCGTTGCAATGTGGGAGATCCTAACTGGAGAAGAGCCCTATGCAAACATGCACTGTGGTGCTATCATAGGGGGAATTGTGAGTAACACACTTAGGCCTCCTATTCCGGAGCGATGTGATCCTGACTGGAGAAAGTTAATGGAAGAGTGCTGGTCACCTGATCCGGCAGCTAGGCCATCATTCACTGAGATAACAAACAGGCTGCGGGTTATGTCCATGGCGATCCAGACAAAGCGGCATAACCAGGCAAACAGATGA 2859 43.65 MTGETSGFSGQHFCNNPDNAVSSGQLAADRNAHDICAQTGEEFSAEFLRDRVAPRRASAMIDTDQRQPKGWCKGFNENHQMVYEPLNGILGLRRGDSECSSDILDFSPQPHHCQGSGVSDASFSDKMKFLCSFGGRILPRPNDGKLRYVGGETKIISIRKNLSWVELVKKTSAICNQLHTIKYQLPGEDLDALISVSSDEDLHHMIEEYHELERIEGSQRLRIFLVPVGEPESPSSFETRATQQNEADYQYVVAVNGMLDPSPRKNSSGQSVSSQTGNTCDYRDPPFFHPLEMKDGASSSNLVGMFTNPAAQFLTSLQIPTKSFQQSPPVSPLPVQNRDPQNSAMHFFEDHAYHDGHESASQFVTDQWPCDNAYCVDSPSYYHNNPPVLKERAFHSHPKDPLGLLSGSTNDLVGSHHRMLHKYQEAYQNQPTLIVDDHKGNNGLGQDTWNWEDEIDTQVGQERKHDKVITDLTSQDNSTLPNTKLQNVCYNPNSVPSIHISPLEFQDHGDTTMNSASTLMIPENSADIVREQPHDYSLGASTPKFLVKSQNATKDMQHAMTEVISKSSFENPDKKAPSDNHHNGNTPGAAVIVEDVTDILPPGIPSSSPLIPQVEDEASDVITSSGEAEAESDIQESEGEEGRDLGESISDAAMAEMEASIYGLQIIKNADLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLTKDFWREARILSNLHHPNVVAFYGVVPDGPGGTLATVTEYMVNGSLRHVLLRKDRSLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNMRDTQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGVAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPERCDPDWRKLMEECWSPDPAARPSFTEITNRLRVMSMAIQTKRHNQANR* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11545075 11551320 + Vvi5g850 Vvi5g850 786992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g850 952 PRINTS Tyrosine kinase catalytic domain signature 754 767 IPR001245 GO:0004672|GO:0006468
Vvi5g850 952 PRINTS Tyrosine kinase catalytic domain signature 791 809 IPR001245 GO:0004672|GO:0006468
Vvi5g850 952 PRINTS Tyrosine kinase catalytic domain signature 862 884 IPR001245 GO:0004672|GO:0006468
Vvi5g850 952 PRINTS Tyrosine kinase catalytic domain signature 906 928 IPR001245 GO:0004672|GO:0006468
Vvi5g850 952 Gene3D Transferase(Phosphotransferase) domain 1 760 952 - -
Vvi5g850 952 Pfam Protein tyrosine and serine/threonine kinase 673 935 IPR001245 GO:0004672|GO:0006468
Vvi5g850 952 SMART PB1_new 141 228 IPR000270 GO:0005515
Vvi5g850 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Vvi5g850 952 CDD PB1_UP2 130 225 - -
Vvi5g850 952 MobiDBLite consensus disorder prediction 601 644 - -
Vvi5g850 952 ProSitePatterns Protein kinases ATP-binding region signature. 678 703 IPR017441 GO:0005524
Vvi5g850 952 SUPERFAMILY Protein kinase-like (PK-like) 661 935 IPR011009 -
Vvi5g850 952 MobiDBLite consensus disorder prediction 566 588 - -
Vvi5g850 952 Gene3D - 145 227 - -
Vvi5g850 952 MobiDBLite consensus disorder prediction 260 284 - -
Vvi5g850 952 Gene3D Phosphorylase Kinase; domain 1 665 759 - -
Vvi5g850 952 SMART serkin_6 672 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g850 952 ProSiteProfiles Protein kinase domain profile. 672 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g850 952 SUPERFAMILY CAD & PB1 domains 142 228 - -
Vvi5g850 952 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 447 950 - -
Vvi5g850 952 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 96 278 - -
Vvi5g850 952 CDD STKc_MAP3K-like 678 935 - -
Vvi5g850 952 PANTHER SERINE-THREONINE PROTEIN KINASE 447 950 - -
Vvi5g850 952 PANTHER SERINE-THREONINE PROTEIN KINASE 96 278 - -
Vvi5g850 952 MobiDBLite consensus disorder prediction 261 281 - -
Vvi5g850 952 Pfam PB1 domain 142 227 IPR000270 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76683 PF07714 PK_Tyr_Ser-Thr 3.10E-63 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g850 - - vvi:100264925 992.26