Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g863 ATGGCGAGGAAGATGCTTATTGATGGGGAGCTGAGCAAGCCTAATGAAGAGGAGACCCATTATGACTTTGATTTGTTTGTTATTGGGGCTGGAAGTGGTGGCGTTCGTGCTGCCAGGTTTTCAGCGAATTTTGGGGCTAAGGTTGCAATCTGTGAGCTTCCCTTTCACCCAGTCAGCTCAGAAGTAATTGGAGGGGTTGGTGGCACGTGTGTTATCCGTGGTTGTGTTCCTAAAAAGATTTTGGTGTATGGAGCATCTTTTAGAGGTGAAATTGAGGATGCCAAGAATTATGGGTGGGAATTGAATGACAAAGTGGACTTTAACTGGAAAAAACTTTTACATAAGAAGACAGAGGAAATAGTCAGGTTAAATGGAATTTACAAGCGGTTACTGACAAATGCTGGGGTGAAACTGTATGAAGGAGAGGGAAAGATTGTTGGTCCTAATGAAGTTGAGGTGACACAACTAGATGGCACTAAGTTGTGTTATTCAGCAAAGCACATATTGATTGCAACTGGTAGTAGGGCTCAACGTCCAACTATTCCAGGGCAGGAGTTGTCTATTACCTCTGATGAGGCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGGTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAGAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGGGGAATTAATCTGCATCCAAGGACAACTTTATCAGAGTTGGTTAAAACGGAAGATGGAATAAAAGTTATCACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGGTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAATTGGACAAGATGGGAGCTGTGAAGGTAGATGAGTACTCCCGGACTAACATACCTAGCATATGGGCCATTGGTGATGTTACAAATCGAATGAATCTTACCCCTGTGGCCTTAATGGAGGGAACCTACTTTGCAAAAACTGTCTTTGGTGGGCAACCTAGCAAACCTGACTACAAGGATATACCTTGTGCTGTGTTCTGTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAAAACACAATCTCTGGACGGCAAGAGAAGACAATTATGAAGCTTCTTGTTGATGCTGAGACAGACAAAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAGGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCACGGTGGGCATACATCCTTCTGCTGCAGAAGAGTTTGTTACAATGCGGTCAGTGACAAGGCGTATCGCAGCGGGCAACAAACCAAAGACAAATCTTTAA 1491 44.27 MARKMLIDGELSKPNEEETHYDFDLFVIGAGSGGVRAARFSANFGAKVAICELPFHPVSSEVIGGVGGTCVIRGCVPKKILVYGASFRGEIEDAKNYGWELNDKVDFNWKKLLHKKTEEIVRLNGIYKRLLTNAGVKLYEGEGKIVGPNEVEVTQLDGTKLCYSAKHILIATGSRAQRPTIPGQELSITSDEALSLDELPKRAVILGGGYIAVEFASIWNGMGVAVDLFFRKELPLRGFDDEMRAVVARNLEARGINLHPRTTLSELVKTEDGIKVITDHGEELTADVVLFATGRAPNTKRLNLEVVGVELDKMGAVKVDEYSRTNIPSIWAIGDVTNRMNLTPVALMEGTYFAKTVFGGQPSKPDYKDIPCAVFCLPPLSVVGLSEEQATDQAEGDILVFTSTFNPMKNTISGRQEKTIMKLLVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDCTVGIHPSAAEEFVTMRSVTRRIAAGNKPKTNL* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12014629 12073403 - Vvi5g863 Vvi5g863 787005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 24 46 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 66 81 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 168 177 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 202 227 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 287 301 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 330 337 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 366 387 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 432 447 - -
Vvi5g863 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 454 474 - -
Vvi5g863 496 Pfam Pyridine nucleotide-disulphide oxidoreductase 24 350 IPR023753 GO:0016491
Vvi5g863 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 25 44 - -
Vvi5g863 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Vvi5g863 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 202 220 - -
Vvi5g863 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 286 302 - -
Vvi5g863 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 315 337 - -
Vvi5g863 496 Gene3D - 369 495 IPR016156 GO:0016491|GO:0050660
Vvi5g863 496 PANTHER GLUTATHIONE REDUCTASE, CYTOSOLIC 1 491 - -
Vvi5g863 496 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 67 77 IPR012999 GO:0016668
Vvi5g863 496 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 367 484 IPR016156 GO:0016491|GO:0050660
Vvi5g863 496 Gene3D - 185 302 IPR036188 -
Vvi5g863 496 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 370 479 IPR004099 GO:0045454
Vvi5g863 496 PIRSF Hg-II_reductase_MerA 7 466 IPR001100 GO:0016491
Vvi5g863 496 TIGRFAM gluta_reduc_2: glutathione-disulfide reductase 21 480 IPR006324 GO:0004362|GO:0006749|GO:0050660|GO:0050661
Vvi5g863 496 SUPERFAMILY FAD/NAD(P)-binding domain 21 390 IPR036188 -
Vvi5g863 496 Gene3D - 23 359 IPR036188 -
Vvi5g863 496 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 1 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g863 K00383 GSR, gor; glutathione reductase (NADPH) [EC:1.8.1.7] - vvi:100254507 989.564
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g863 . . Bda03g01152 . . Bpe14g01304 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0222 Cone15ag0239 . . . . . . . . . . . . Bma02g00735 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004411 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 2 1 1 3 1 43