Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g870 ATGGAAATAATCCGATCTCAGAGGAGGTCTTCCAAGGTCGACGATGTCGTCTCAACACTCCCTCTCTACCGTTCAGCTCCTCCCCTGCAAGTCAGGCTAGAAGATTTTGAACTTTTTGCCATAGATCGGCTTCGAGTTCTTAAAGGGATTTCTGATGGATTATCCCGAGGAAAGAAGCCTGACGAAATGGAAAAATTGGTAAGCGATCTATGGAAGGCAAATATGAGGCATCCACAGGCATCTGAGTTTGTCAACAAGGATATAATTTCCCACTTTGTTCTTAGGCTCGTTTATTGTAGAACGGAAGAGTTAAGGAAATGGTTTCTTTCCATGGAGACTGCCCTCTTTCGCCACCGATTCCGTCTTGAAACTCCAGAAGCTCAGAGGGTGTTATTGGCAGAATTTGACCATCCTTATAAAGCAGTTAGCCATGCCGAATTTGAGAGTGTAAAGGAAAAATTGGGCCAAGTTGCACGTTCCTTTGGGCAGTCTTTACCCAGTGCTGATGCTATATACTTCAAGGTACCGTTTGAAGAAGTCCCTGAACTTGTAGCTGGCCGTAGAGTGTTTCTTCAGAAAGGGCATGCATATGTTGCTATGAATCAGGTGGTTTCTCTCGTTGTCACACAATTTCGCAGCCATCTATCTAAGGCACTTGTGCTGACAAACAGAAAATGGACTTCTACCATCAGAGAACAAGAGAAGGAGCGGCTGACTCCTATTGTAGAAGCCTTATCTACAAGCTATTTGGGTCCAGACTATTCTCAGCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTAAGGGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAATTAGGTCTTTTTCTCAAGGGGGTTGGATTGAAATTGGATGATGCCCTTGCTTTCTGGAAAGCTGAGTTCTCCCAGAAGGTTGGTTCTGAAAGGTTTGACAAAGAATATGCTTACAGCATACGCCATAACTACGGAAAAGAAGGAAAGAGAACAGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAGTGAGGAGAATTTAAGAGCTGCTCTTGGCAAGATGGGTGTGGGCAATCGTGCAATGGAGGATGTAATGGACAAAGTCCGAAATCGACATTATCAGTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGCATCCAAAAGTAGATCCTGCTAGATGA 1359 43.12 MEIIRSQRRSSKVDDVVSTLPLYRSAPPLQVRLEDFELFAIDRLRVLKGISDGLSRGKKPDEMEKLVSDLWKANMRHPQASEFVNKDIISHFVLRLVYCRTEELRKWFLSMETALFRHRFRLETPEAQRVLLAEFDHPYKAVSHAEFESVKEKLGQVARSFGQSLPSADAIYFKVPFEEVPELVAGRRVFLQKGHAYVAMNQVVSLVVTQFRSHLSKALVLTNRKWTSTIREQEKERLTPIVEALSTSYLGPDYSQPREFVEISIKDIDQVANSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLKGVGLKLDDALAFWKAEFSQKVGSERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDHHGCPYRHFSEENLRAALGKMGVGNRAMEDVMDKVRNRHYQLACTLTFEAVHGSSCDAGINHPNQYFSDSQKILHPKVDPAR* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12262125 12304003 - Vvi5g870 Vvi5g870 787012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g870 452 PANTHER DNA PRIMASE LARGE SUBUNIT 1 451 - -
Vvi5g870 452 PIRSF DNA_primase_large 2 451 IPR016558 -
Vvi5g870 452 Pfam Eukaryotic and archaeal DNA primase, large subunit 172 437 IPR007238 GO:0006269
Vvi5g870 452 Gene3D - 2 245 - -
Vvi5g870 452 PANTHER DNA PRIMASE LARGE SUBUNIT 1 451 IPR007238 GO:0006269
Vvi5g870 452 CDD PriL_PriS_Eukaryotic 22 440 IPR016558 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g870 K02685 - vvi:100244238 905.975