Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g879 ATGAAATTTTTAACATTAAAAGATGAAGAATTAAGAGGACCAAACACTTGGCCCTTTGGGATAATACACTGGGGGTGGCCATGCATGGCCATGCGAAAGTGGGGACTGGGAGGATTCTGTGCTTATGTACATTGCCCAATATATCTTATGGGTATTTCAATGAAGTCATCTTCACAGCCCCATTGTTACATCGTACAGGCTACAGTTTATTTCTCTCTCTACAATCTTGCACATCTCACTCTAGTGGCCTCTGATTCTTCCATGGACGCAGCAGCAACGGCGACGGCGTCGCAGCTCGTGTACTGCGGAATCGAGCCTCTTCGTCGCACCTGCCCCGCCGCTTCCAAGAAGAGAGCTATGCCTTCTGGAATAGTTGCGTTTCGGCGACCAAACGGCGTGGTTCGGGCCGTGGCCACCGACCCCAAGCCTAACCAAACAGAATCTTCTGGATCGTCTCCGAGGCGGGGGGTCGTCAATGGGTCTTCTAGATCTCCGCCTGTCAATGGCGTTTCGACGAGAATTGGAGATGTTTCAAAAGAGATTAAAAAAGTAAGAGCTCAGATGGAAGAGAATGAACAAGTGGCTATACTTATGAGAGGTCTTAGGGGTCAAAATTTACGGGATTCACAGTTTGCTGATGAGAATGTTCAGCTTCGGCTAGTTGAGGTAGATGAAAGCAGTGAGTTTTTGCCCTTGGTGTATGATCCTGCTAGTATAGCTGCATACTGGGGAAGAAGGCCTCGAGCAGTTGCCACTCGTATTGTCCAGTTACTCTCTGTTGCTGGGGGTTTTCTTTCACATCTTGCCTGGGATTTAATAAATAAGAAGGTCAAGGAGAATGAAGTTGCTCGGGCAATTGAATTGAGAGAGATTGTAACATCTTTGGGTCCAGCATATATAAAACTTGGGCAAGCATTGAGTATTCGACCAGATATACTATCCCCTGTGGCAATGACTGAGTTGCAAAAACTTTGTGATAAGGTCCCTTCATTTCCTGATGATGTAGCTATGGCTCTAATTGAAGAAGAGCTTGGCCGACCATGGCATAAAATATATTCTGAGCTTACTTCTTCCCCAATTGCTGCTGCATCTCTTGGACAGGTATATAAGGGCCGACTAAAAGAAAATGGGGATTTGGTGGCTGTTAAAGTGCAGAGGCCTTTCGTTCTTGAGACTGTGACAGTTGATTTGTTCGTCATACGAAACTTGGGGTTAGTTCTCCGGAAGTTTCCTCAGATCTCTGTTGATGTGGTTGGCTTGGTTGATGAATGGGCAGCCCGTTTCTTTGAGGAGCTTGATTATGTTAATGAGGGTGAAAATGGGACACACTTTGCTGAAATGATGAGGAAGGACCTTCCACAGGTTGTTGTACCAAAAACCTATGAGAAATATACTTCGAGAAAGGTTCTCACCACACAATGGATAGAAGGAGAAAAGCTGTCACAAAGTACAGAAAGTGATGTCGGGGATCTGGTAAATGTTGGAGTCATATGCTACCTAAAGCAGTTGCTTGATACTGGTTTTTTCCATGCTGATCCACATCCGGGAAATTTGATCCGCACTCCAGATGGGAAGCTAGCTATACTAGACTTTGGCCTAGTGACAAAGTTAACAGATGATCAGAAGTATGGAATGATTGAAGCAATTGCTCACCTTATTCATCGGGATTATGGAGCAATAGTGAAAGATTTTGTCAAACTTGATTTCATTCCAGAGGGGGTTAATTTGGAACCAATCTTGCCAGTGCTGGCCAAAGTCTTTGATCAGGCACTTGAAGGGGGTGGAGCAAAGAATATCAACTTTCAGGAATTGGCATCAGATTTGGCCCAAATAACATTTGATTATCCGTTCAGGATACCTCCGTATTTTGCTCTTATAATTAGAGCAATAGGGGTGCTGGAAGGCATAGCTTTGGTGGGTAACCCTGATTTTGCTATTGTAGATGAAGCTTATCCCTATTTAGCACAGAGGCTCCTGACTGATGAGTCACCTCGTTTAAGGAATGCATTACGATATACAATATATGGAAAATCTGGAGTTTTTGATGCTGAAAGATTCATTGATGTCATGCAAGCCTTTGAGGATTTCATAACAGCCGCTAAGAGTGGAGGTGGAGAAAATATGAATGGGGGTATGGCTGAACTTGGAATCCTGCAAAGTCAAAATAGTTCTATTTTTCCTGGATTTCCTTCCAGTACATCTCAACTACAGCAGCCAGTTCAAACAAGGGCAGCCCTAGCATTTCTACTGTCTGACAAGGGAAACTTTTTTCGAGAATTTCTTCTGGATGAGATTGTAAAGGGCATGGATGCTATTGCAAGGGAACAGTTGGTACAGATAATGGCAGTCCTAGGGATGGGTGATGCTGCTCCAGTATTTAGTATGGTTCCTGCTTTTGGACTTATCAAGCCTGCTGCACTTCTACCCACAGTAACTGAGGAAGACAAAGTTATACTGAATAACGTTCAAAAAATTGTTGAATTTCTAACTGCAGGAAGTTCAAAATCAAGACCATTGAATCAGAGTGTGGATGATGCTCAGATTATCCAAGAGTTGATTCCAGTGTTGCCAGGCATCTCTGCTACAATACTACCTGAGGTGCTAAGTCGATTATCTTCCCGGGTTGCAGCTCGCATCATCCGGGATGCATTTTTGTAA 2658 43.94 MKFLTLKDEELRGPNTWPFGIIHWGWPCMAMRKWGLGGFCAYVHCPIYLMGISMKSSSQPHCYIVQATVYFSLYNLAHLTLVASDSSMDAAATATASQLVYCGIEPLRRTCPAASKKRAMPSGIVAFRRPNGVVRAVATDPKPNQTESSGSSPRRGVVNGSSRSPPVNGVSTRIGDVSKEIKKVRAQMEENEQVAILMRGLRGQNLRDSQFADENVQLRLVEVDESSEFLPLVYDPASIAAYWGRRPRAVATRIVQLLSVAGGFLSHLAWDLINKKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMTELQKLCDKVPSFPDDVAMALIEEELGRPWHKIYSELTSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFVIRNLGLVLRKFPQISVDVVGLVDEWAARFFEELDYVNEGENGTHFAEMMRKDLPQVVVPKTYEKYTSRKVLTTQWIEGEKLSQSTESDVGDLVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYGAIVKDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYLAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDVMQAFEDFITAAKSGGGENMNGGMAELGILQSQNSSIFPGFPSSTSQLQQPVQTRAALAFLLSDKGNFFREFLLDEIVKGMDAIAREQLVQIMAVLGMGDAAPVFSMVPAFGLIKPAALLPTVTEEDKVILNNVQKIVEFLTAGSSKSRPLNQSVDDAQIIQELIPVLPGISATILPEVLSRLSSRVAARIIRDAFL* 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13407869 13455264 - Vvi5g879 Vvi5g879 787021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g879 885 Gene3D Transferase(Phosphotransferase) domain 1 352 551 - -
Vvi5g879 885 MobiDBLite consensus disorder prediction 141 171 - -
Vvi5g879 885 ProSiteProfiles Protein kinase domain profile. 354 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g879 885 SUPERFAMILY Protein kinase-like (PK-like) 326 559 IPR011009 -
Vvi5g879 885 CDD ABC1_ADCK3-like 323 564 - -
Vvi5g879 885 PANTHER PROTEIN KINASE-LIKE DOMAIN 125 884 - -
Vvi5g879 885 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 125 884 - -
Vvi5g879 885 MobiDBLite consensus disorder prediction 135 172 - -
Vvi5g879 885 Pfam ABC1 atypical kinase-like domain 323 562 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g879 K08869 ADCK, ABC1; aarF domain-containing kinase - vvi:100242787 1536.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34