Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g893 ATGGATAAAGAAGAAAACTACTCGGCGGCGTTGCCGGCGAGTTTTACTGGCCTGGATTATACTCTAAATCAGCAACAACAGCAGGAACAGCTCATGAAGCCTCGAATCGGTGAAAGTTCTGATGATAATAACCATGGAGTGGTGGATTACATGTTGAGTAATCCTCAACATCAACAGCTAACGTCATCAGGGTTTTGCAGTTCTTCTTTCGATAAACTAAGCTTTGCTGATGTGATGCAATTTGCAGATTTTGGCCCCAAGTTGGCCTTAAATCAGACCAAGGTTTCTGAAGAAGAAACTGGGATCGATCCCAGGTATGACGATGCGAGAATTGTGGAAGAAATTGGGGAAGGTGAGGATGAAGAAGAAAATACCTCGGTGCAACTCCAGTTTCTGGGCGAAAATCTGCAGAAAAACACAGTAATGGATGCCAAAAACAAACGAAAGAGACCAAGGACCATCAAGACAAGCGAAGAAGTTGAAAGCCAGCGGATGACTCATATCGCAGTAGAAAGAAACAGAAGGAAGCAAATGAATGAGCATCTTCGAGTCTTGAGGTCTCTCATGCCCAGCTCATACGTACAAAGGGGAGATCAAGCATCCATTATTGGTGGAGCAATCGAGTTTGTTCGAGAGTTGGAGCAGCTTCTCCAATGCTTGGAATCTCAGAAGCGGCGAAGGCTATTCGGGGATGCCCCCAGACAGATGGGAGATTCATCATCGCTTGCAATCCAACAGCCACAACAACCGCCATTCTTTCCTCCTTTGCCTCTCCCCAATGATCAAATCAATTTTGGTACCGGACTGCGAGAGGAAACAGCTGAGAACAAGTCTTGCTTGGCCGACGTAGAAGTGAGACTGTTAGGGTTTGATGCCATGATCAAGATCCTCTCTAGACGAAGGCCAGGCCAACTCATTAAGACCATTGCAGCCCTAGAAGACTTGCAGCTCAACATCCTCCACACCAACATCACTACCATCGAACAAACTGTCCTTTATTCCTTCAACGTCAAGATTGCCAGCGAGTCCAGATTCACCGCGGAAGACATAGCGAGCTCCGTTCAACAGATCCTCAGTTTTATTCATGCAAACAGCAGCATATGA 1104 46.2 MDKEENYSAALPASFTGLDYTLNQQQQQEQLMKPRIGESSDDNNHGVVDYMLSNPQHQQLTSSGFCSSSFDKLSFADVMQFADFGPKLALNQTKVSEEETGIDPRYDDARIVEEIGEGEDEEENTSVQLQFLGENLQKNTVMDAKNKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPSSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLFGDAPRQMGDSSSLAIQQPQQPPFFPPLPLPNDQINFGTGLREETAENKSCLADVEVRLLGFDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQILSFIHANSSI* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14065431 14067113 + Vvi5g893 Vvi5g893 787035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g893 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 213 IPR011598 GO:0046983
Vvi5g893 367 SMART finulus 168 219 IPR011598 GO:0046983
Vvi5g893 367 CDD ACT_UUR-ACR-like 293 357 - -
Vvi5g893 367 PANTHER TRANSCRIPTION FACTOR FAMA 2 104 - -
Vvi5g893 367 PANTHER TRANSCRIPTION FACTOR FAMA 119 366 - -
Vvi5g893 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 227 IPR036638 GO:0046983
Vvi5g893 367 Gene3D - 153 227 IPR036638 GO:0046983
Vvi5g893 367 Pfam Helix-loop-helix DNA-binding domain 163 214 IPR011598 GO:0046983
Vvi5g893 367 PANTHER TRANSCRIPTION FACTOR FAMA 119 366 IPR044283 GO:0003700|GO:0010052
Vvi5g893 367 PANTHER TRANSCRIPTION FACTOR FAMA 2 104 IPR044283 GO:0003700|GO:0010052
Vvi5g893 367 ProSiteProfiles ACT domain profile. 293 367 IPR002912 -
Vvi5g893 367 MobiDBLite consensus disorder prediction 143 165 - -
Vvi5g893 367 CDD bHLH_AtFAMA_like 165 236 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14878 PF00010 HLH 1.10E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g893 - - vvi:100258890 637.106