Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g894 ATGTACTCTGCAATTCATTCCCTTCCGCTCGACGGAGGCGTCGCCCACGCCGACTTCCAGGGCTCTCTCGACGGCACCAATCTGCCCGGCGATGCTTGCTTGGTTCTCACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCCGAGCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCATTTGAAGTCGCATCTTCAGAAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGATGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAGTCAATACTTGAGAAAGCCTGCAAAGCTCTCAAAGATCAGGCTGCAGCAACTGCAGGGCTTGAAGCTGCTAGGGAAGAGCTCTCTGAACTACAGATCAAGGTCTCCAATGATTGTGAAGGGATGAACCCACTTGAGACCATAAAAATGCCTTCTGCTTGA 678 49.41 MYSAIHSLPLDGGVAHADFQGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNSSCIAESQDTGSSSTSSSRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPSA* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14128822 14143945 + Vvi5g894 Vvi5g894 787036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g894 225 PANTHER PROTEIN PHR1-LIKE 2 1 224 - -
Vvi5g894 225 Gene3D - 40 98 - -
Vvi5g894 225 Coils Coil 186 206 - -
Vvi5g894 225 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Vvi5g894 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Vvi5g894 225 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Vvi5g894 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 224 IPR044848 GO:0003700
Vvi5g894 225 SUPERFAMILY Homeodomain-like 40 98 IPR009057 -
Vvi5g894 225 MobiDBLite consensus disorder prediction 107 128 - -
Vvi5g894 225 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14879 PF00249 Myb_DNA-binding 1.10E-07 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g894 - - vvi:100250267 419.083