Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g894 | ATGTACTCTGCAATTCATTCCCTTCCGCTCGACGGAGGCGTCGCCCACGCCGACTTCCAGGGCTCTCTCGACGGCACCAATCTGCCCGGCGATGCTTGCTTGGTTCTCACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCCGAGCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCATTTGAAGTCGCATCTTCAGAAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGATGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAGTCAATACTTGAGAAAGCCTGCAAAGCTCTCAAAGATCAGGCTGCAGCAACTGCAGGGCTTGAAGCTGCTAGGGAAGAGCTCTCTGAACTACAGATCAAGGTCTCCAATGATTGTGAAGGGATGAACCCACTTGAGACCATAAAAATGCCTTCTGCTTGA | 678 | 49.41 | MYSAIHSLPLDGGVAHADFQGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNSSCIAESQDTGSSSTSSSRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPSA* | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 14128822 | 14143945 | + | Vvi5g894 | Vvi5g894 | 787036 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g894 | 225 | PANTHER | PROTEIN PHR1-LIKE 2 | 1 | 224 | - | - | |
Vvi5g894 | 225 | Gene3D | - | 40 | 98 | - | - | |
Vvi5g894 | 225 | Coils | Coil | 186 | 206 | - | - | |
Vvi5g894 | 225 | Pfam | MYB-CC type transfactor, LHEQLE motif | 136 | 182 | IPR025756 | - | |
Vvi5g894 | 225 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 38 | 98 | IPR017930 | - | |
Vvi5g894 | 225 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 41 | 96 | IPR006447 | GO:0003677 | |
Vvi5g894 | 225 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 224 | IPR044848 | GO:0003700 | |
Vvi5g894 | 225 | SUPERFAMILY | Homeodomain-like | 40 | 98 | IPR009057 | - | |
Vvi5g894 | 225 | MobiDBLite | consensus disorder prediction | 107 | 128 | - | - | |
Vvi5g894 | 225 | Pfam | Myb-like DNA-binding domain | 44 | 94 | IPR001005 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14879 | PF00249 | Myb_DNA-binding | 1.10E-07 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g894 | - | - | vvi:100250267 | 419.083 |