Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g896 ATGCAGTGCCTCAACCGCATCTGCTTCATCTTACCCCCAGAGCTCAATGATATTCACCCTCTGGATCATCATGTTTCCACCGAGAAACAGAATCCCAATCGCGGTCGCGGTCGCGGGTGTGGCACCCAGGTTCTTGCCATTCTTCAACACTTCCTAAGCCGGTTTCATGACTTGAAATGGACTAGTTTTTGTCACTGCCACCCGCTAACGAAGCAGGCCTCCGAGGTGTTTCATGACATGGAAGGCGTGCACGTTTCTGACAAGGTCGTTGCTGGGAACAACCCCAGGATATTCAGTTTCTCCGAGCTCTATATAGGGTCCAACGGATTCTGTGAGGATGAGGTTCTTGGAAGTGGAGGCTTTGGGAAAGTTTTTAGAGCAGTTCTGCCCAGTGACGGGACGGTGGTCGCGGTGAAGTGCGTGGCGGAGAAGGGAGAGCCGTTTGAGAAAACTTTTGTGGCAGAATTGGTGGCGGTGGCTCAGCTGCGCCACCGTAATCTGGTTAGGTTGAGGGGATGGTGTGTTCATGAAGAGCAGTTGCTCCTTGTGTATGATTACATGCCCAATCGCAGCCTCGATAGGATACTTTTCCGGAGACCAGAGAATTCACTACTTCTTGGCTGGGAGAGGCGGAGGAGAATAGTTGGAGGCTTGGCCGCTGCACTTTATTATCTCCACGAGCAGTTGGAAACTCAGATCATACACCGGGATGTGAAGACCAGCAACGTGATGCTTGACTCCCATTACAATGCCCGGCTGGGTGACTTTGGACTGGCTCGGTGGCTGGAACACGAAATTGAAATTGAAACCAAGACCAATTCAATAAGGCATCATCAGTTTCGGTTGGCAGAGACCACCAGAATTGATGATCAAATCATTTTGCTTGATTGGATCCGACGGCTGTCCGATGAGGGGAAGCTTTTACAGGTAGGGGATAATAGATTGCCAGACGGTTCTTACAGGCTATCTGACATGGAGCGTCTAATTCATCTGGGCCTCCTCTGCACACTCCACAACCCCCACTCACGACCCAACATGAAATGGATTGTAGAAACACTTTCTTCCCAATCTTCCACCAGGCTTCCTGCTCTCCCATCATTTCAATCCCACCCTTTGTATATCTCTTTATCTTCCCCAACCACAGGAGAAACCATATATGCCACAGCAGAAAATGGAAGAATTACCGAAACAAACTCTTCCAACAGCAGCCGCCGCCAGCAAAGCAGTATTTTCCCCATGGTCCAAACTCCACAAGAGATATCCTACAAGGAAATTGCCTCTGCAACAAATAATTTCTCAGAATCTCAGAGGGCGGCAGAATTGGACTTTGGAACTGCCTATCATGGCTTCCTTGACAACGGTCACCATGTTCTGGTGAAGCGGCTTGGCATGAAGACGTGCCCAGCACTGCGGGCACGTTTCTCAAATGAACTCCAGAACTTGGGGAGGCTCCGCCACCGGAACCTGGTACAGCTCCATGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTCTATGATTACTTGTCAAATCGCCTACTGAGCCACCTCCTTTTCCACCTAGATAACAAGAAAGTCCATTCCACCCTGCATTGGCGTCACAGATACAACATTATCAAATCGCTAGCTTCCGCCATTCTTTATCTCCATGAGGAATGGGATGAACAAGTTATCCACAGAAACATTACCTCTTCTGCCATTATCATTGATGCTGACATGAATCCAAGGCTCAGTTCCTTTGCCCTAGCGGAATTCTTGACACGAAATGAGCATGGTCATCATCAAATGGCAGTAGATTTCCGATGGCCTGGCGTGTTACTGGTGAAGAGGGTTCGTGAATTGGCTGAAAGGAAAAAGCCACTGGAGGAAATGGCTGATTGGAGGTTAGATGGAGAGCATGATCAAGAGGAACTGGTGAGACTGATTAAACTAGGAATGGCATGCACACGCTCCAAACCAGAATTAAGACCCAGTATGGGGCAGATTGTAAGCATACTTGATGGCAATGATAAATTCTTTATGGAAGAAAGGCAAAACAAGGAGAGAAGAGAAGAATGGAAACAAAGAAATGCTTGTTCTTTGTCGTTGATCAAGAGAATCCAGGCCCTAGGAATACAATAG 2121 48.28 MQCLNRICFILPPELNDIHPLDHHVSTEKQNPNRGRGRGCGTQVLAILQHFLSRFHDLKWTSFCHCHPLTKQASEVFHDMEGVHVSDKVVAGNNPRIFSFSELYIGSNGFCEDEVLGSGGFGKVFRAVLPSDGTVVAVKCVAEKGEPFEKTFVAELVAVAQLRHRNLVRLRGWCVHEEQLLLVYDYMPNRSLDRILFRRPENSLLLGWERRRRIVGGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHEIEIETKTNSIRHHQFRLAETTRIDDQIILLDWIRRLSDEGKLLQVGDNRLPDGSYRLSDMERLIHLGLLCTLHNPHSRPNMKWIVETLSSQSSTRLPALPSFQSHPLYISLSSPTTGETIYATAENGRITETNSSNSSRRQQSSIFPMVQTPQEISYKEIASATNNFSESQRAAELDFGTAYHGFLDNGHHVLVKRLGMKTCPALRARFSNELQNLGRLRHRNLVQLHGWCTEQGEMLVVYDYLSNRLLSHLLFHLDNKKVHSTLHWRHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAIIIDADMNPRLSSFALAEFLTRNEHGHHQMAVDFRWPGVLLVKRVRELAERKKPLEEMADWRLDGEHDQEELVRLIKLGMACTRSKPELRPSMGQIVSILDGNDKFFMEERQNKERREEWKQRNACSLSLIKRIQALGIQ* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14152438 14154922 - Vvi5g896 Vvi5g896 787038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g896 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vvi5g896 706 SMART serkin_6 110 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g896 706 ProSiteProfiles Protein kinase domain profile. 432 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g896 706 Gene3D Transferase(Phosphotransferase) domain 1 278 362 - -
Vvi5g896 706 Gene3D Transferase(Phosphotransferase) domain 1 187 277 - -
Vvi5g896 706 Gene3D Transferase(Phosphotransferase) domain 1 602 685 - -
Vvi5g896 706 Pfam Protein tyrosine and serine/threonine kinase 442 600 IPR001245 GO:0004672|GO:0006468
Vvi5g896 706 PANTHER - 595 705 - -
Vvi5g896 706 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vvi5g896 706 Gene3D Phosphorylase Kinase; domain 1 392 508 - -
Vvi5g896 706 Gene3D Transferase(Phosphotransferase) domain 1 510 601 - -
Vvi5g896 706 PANTHER - 6 289 - -
Vvi5g896 706 PANTHER - 277 594 - -
Vvi5g896 706 SUPERFAMILY Protein kinase-like (PK-like) 406 668 IPR011009 -
Vvi5g896 706 Pfam Protein kinase domain 112 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g896 706 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 6 289 - -
Vvi5g896 706 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 277 594 - -
Vvi5g896 706 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 595 705 - -
Vvi5g896 706 SUPERFAMILY Protein kinase-like (PK-like) 94 358 IPR011009 -
Vvi5g896 706 ProSiteProfiles Protein kinase domain profile. 110 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g896 706 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g896 - - - vvi:100257175 1374.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76684 PF07714 PK_Tyr_Ser-Thr 1.00E-16 CL0016 Vvi PK