Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g9 ATGAAAAACACTATCTACACCCAACAGTATGTAGATTATGTTTTGGTGAGTGAGAAGGAGAAAATGAAATGCTGTGACATCGAATACAGATTACCAGTGGAGTCTTCTCAAACGTTCATCTATGGTGGAATTCTTCTTGCTGGATTCTTTGTATATTTCCTCGTCAGAATCACAACGGCTGCCCGGACGGAAATCGTGTCAAAGATCTCCGCAGCTTTTACGCGGGATTCCCAGGCGGCAAGTCCGAGGAACAAGGGCCACGACGTCGCTGGGGTGATGGAGGATGTGTGTAAGGTTATGGACAGGGACGACGACGGCAAAGTAGGGCTCGAGGATTTGAAGAGCTATATGAATTGGGCCGGGTTTTCTGCAACTGAGGAAGAAATCAAGGCCATGATCAAATTGGGCGGCGGTGATGAAGATAGTGGTGTATCCTATGATGGTCTGCTCAAGATCCTGGGCGTTGATTATTATAAATTAATATATTATTTTTATTTTCAGAATTATTCAAGTAAAATCAAGAGAGGAGTTAAGAGATGA 540 43.7 MKNTIYTQQYVDYVLVSEKEKMKCCDIEYRLPVESSQTFIYGGILLAGFFVYFLVRITTAARTEIVSKISAAFTRDSQAASPRNKGHDVAGVMEDVCKVMDRDDDGKVGLEDLKSYMNWAGFSATEEEIKAMIKLGGGDEDSGVSYDGLLKILGVDYYKLIYYFYFQNYSSKIKRGVKR* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 98420 99425 + Vvi5g9 Vvi5g9 786151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g9 179 PANTHER CALCIUM BINDING PROTEIN 83 157 - -
Vvi5g9 179 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Vvi5g9 179 SUPERFAMILY EF-hand 88 153 IPR011992 -
Vvi5g9 179 CDD EFh 98 153 IPR002048 GO:0005509
Vvi5g9 179 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 83 157 - -
Vvi5g9 179 Gene3D - 56 158 - -
Vvi5g9 179 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g9 K02183 CALM; calmodulin - vvi:100253434 160.999
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g9 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .