Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g900 ATGGCTTGCCAGGAGATTCATTCGTGGACGTTTGGTGGATTGGTGGGCGCCTATCTTGATCTCGCTATAGCCTATCTTCTACTGTGTGGATCAACTCTTGCCTTTTTCGCCTCTAAGTTTCTGAGCTTTTTTGGCTTGTGTTTGCCATGCCCTTGCAACGGCTTCTTTGGCAACCCAAATGGAGACAATTGCTTGCAAAAGTTTCTTGTTGATTACCCAACTGAGAGGATCTCTTCCGTTCAATTGTGCGTGAAGAGCAAATTCCCCTTTGATTCGGTGTGGGCAAATGAAGGGAGTCCCCATCCCAATTGGAAGTTGCTGAAAGGGAGAAACAGTGATGATGGGGCGGTTGGATTGGAAGGTGAAGCCTCGTGTAGCTCGTTTTGGGATGTGATGAGATCCCCGGATATAGCTGGGAAAGACTCAATTTCAAGAAATGGATCCTGTGGAGTGATGAACACGCCGGCTTTGAAAGAAGGAAAGTCCGATACGAAGGGGAAAAGGGTTAGCAATCAGAGGCCCAAAACAGGTGTTCGGCGCCGTCGGAGAAGTGCAGTTGATCATGGGAAGTTTTCTTCAGTTTCATCATTTGATCCTCCACGCTTGGATGCACCAAGTGGTCTTCGGTCTCCTTCTAGTGTCAGTGAAACAGGTGAGGCATTTGTTGGAAAAACCTTGGTCCCTGATGCTTCCGGTGGGGAGGATGGTTTTCAGGATGAGTTGGTTCCCATTCTTATTGATTTGGGAGAAAGAGCCCTACATGGCATTAAGTTGAATGAACACATTGATGAAGATAAGCCCTCTGAGAAGGATGCATCATCTGCTGAAGAGGTGAAATGCAATGCACGAGGAAAGCTATCATTTAATGGTAACACAGAAAATACAGTTAGAGTCTTGGAACAAGCCCTTGAAGAAGAGCATGCTGCTCGTGCTGCTCTGTACCATGAGCTCGAGAAAGAGAGAAGCGCTGCTGCATCTGCTGCAGATGAGGCTATGGCTATGATATTGCGTATCCAAGAGGAAAAGGCATCAATAGAAATGGAAGCTCGGCAATTTCAGAGAATTATAGAAGAAAAATCTGCTTATGATGCTGAAGAAATGAACCTTCTGAAAGAAATTCTTCTAAGGAGAGAAAGGGAGAAACATTTCTTGGAGAAGGAAGTTGAAGCCTATAGGCAAATGATGTTCTCTGAAAATGATCTATTAGAAGGTAATACGCATGATATAGTTGATACACCAGAACAGAGGCCCATTTCTTCTCTTTATTTAAGTGAGGACCCAGTATTGATGCTGCGGCGGATTAGTGAATCTATTGATAAAGAGGAAAAGGTAAAAGATGCAGATAGATGTTCTGTTTATGAATCAACATCTATAGAGATGAAATATCCTACCCTTTCTTTTAGTAAAGAATTACCTATTCCCGATTGGGAAGAAGATGCAGACTTGTCAAAAGGAGGGGAGATTCATGTGAATCCAAACGTTGGCAAACACCATTCACATAAATCAGGACTTAATGGTAAGTGCAATGAAGAGTTTCAAGAGAAGGGAATGTTACCAGTGGATGAGAATCAATGTGCTCAGAAAAGAGGGGTGCAGAAACTAGGGGCATGTTCACAGTTATATAGGTCAAGCAGTTCTCAAGAAAATTCTTTTCTTGAGAAAGCTAGTGCCCCAATAGGTGAAGACCAAAAACAAAGTGGTGAAATCAAATTATTTCAAGGAATTATATCAACGACAACCAAAACTCATGCTGAAGCTGAGATGCATGTTCCACATGATGGTGAAGATCTGGACAAGCTCGGAAAGACTGCAGATCACGAAAGCAAAGATCACTGTTGCTCAGCATTTGATATTGAGCCTCGTGTTCATGATGTTCATGTCATTGATCATGAATCTAATCTGTGTAATGAGGCAAATGAAAGCAAAATTGAACAGACTCCAGATATTCCTGCAAAACTTGACCCCCCTGTTGAAGCTTCTCTGATTCAAAGGATTGGTGTTGTTTGTGATTTTCCGATGATGAGCACATTGGAAAGTGAAACAAACAATGACCAAAGCTTTTCAGACATAACTAATGGGTTGCCACCACTGGGTGGTTCACGAGGAAAAGCTTTGCTTTCTGATATGCGGAGACATTCTATCTCTTCAGTTGATAATGAAAGGTTGAAGATTGAAACTGAAGTTGAGAGGCTCCGAGAAAGGTTGAGGATTGTGCAAGAAGGAAGAGAGAAGCTCAACTTCTCTGTGGAGCACAGGGAGAGGGAAAATATTCAATTGCAACTTTTGGAGGATATAGCAAGCCAGCTTAGAGAGATTCGGCAGCTAACTGAACCTGGGAAGGCTGTACGCCAGGCTTCTTTGCCTCCTCCATCTTCTAAGGAGATGACAGGTTGA 2394 43.11 MACQEIHSWTFGGLVGAYLDLAIAYLLLCGSTLAFFASKFLSFFGLCLPCPCNGFFGNPNGDNCLQKFLVDYPTERISSVQLCVKSKFPFDSVWANEGSPHPNWKLLKGRNSDDGAVGLEGEASCSSFWDVMRSPDIAGKDSISRNGSCGVMNTPALKEGKSDTKGKRVSNQRPKTGVRRRRRSAVDHGKFSSVSSFDPPRLDAPSGLRSPSSVSETGEAFVGKTLVPDASGGEDGFQDELVPILIDLGERALHGIKLNEHIDEDKPSEKDASSAEEVKCNARGKLSFNGNTENTVRVLEQALEEEHAARAALYHELEKERSAAASAADEAMAMILRIQEEKASIEMEARQFQRIIEEKSAYDAEEMNLLKEILLRREREKHFLEKEVEAYRQMMFSENDLLEGNTHDIVDTPEQRPISSLYLSEDPVLMLRRISESIDKEEKVKDADRCSVYESTSIEMKYPTLSFSKELPIPDWEEDADLSKGGEIHVNPNVGKHHSHKSGLNGKCNEEFQEKGMLPVDENQCAQKRGVQKLGACSQLYRSSSSQENSFLEKASAPIGEDQKQSGEIKLFQGIISTTTKTHAEAEMHVPHDGEDLDKLGKTADHESKDHCCSAFDIEPRVHDVHVIDHESNLCNEANESKIEQTPDIPAKLDPPVEASLIQRIGVVCDFPMMSTLESETNNDQSFSDITNGLPPLGGSRGKALLSDMRRHSISSVDNERLKIETEVERLRERLRIVQEGREKLNFSVEHRERENIQLQLLEDIASQLREIRQLTEPGKAVRQASLPPPSSKEMTG* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14230836 14235424 + Vvi5g900 Vvi5g900 787042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g900 797 MobiDBLite consensus disorder prediction 149 217 - -
Vvi5g900 797 MobiDBLite consensus disorder prediction 776 797 - -
Vvi5g900 797 Pfam Zein-binding 299 388 IPR007656 -
Vvi5g900 797 ProSiteProfiles GTD-binding domain profile. 294 392 IPR007656 -
Vvi5g900 797 PANTHER BNAANNG28530D PROTEIN 3 796 - -
Vvi5g900 797 Coils Coil 374 394 - -
Vvi5g900 797 MobiDBLite consensus disorder prediction 172 186 - -
Vvi5g900 797 Coils Coil 714 734 - -
Vvi5g900 797 Coils Coil 328 348 - -
Vvi5g900 797 PANTHER BNAANNG28530D PROTEIN 3 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g900 - - - vvi:100250255 1535.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005885 2 0 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39