Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g902 ATGATGGGTGAACAGGGAAAGACAGAGGAAGGTGGTGGTGGTGGTGGGGGTGGGAAGGAGTTGGGAATGACATCACAGTCTTCTGCAAATCAGAGCCCATCTCTCAGGAATGAAACAGTCTCAAACTATCATCCATATCCACCACCACTTGCAAAATACGAAGATATCGTTTCCAGTCCAAAACTTTTCATGGGCACTTTGGAGAAGCTCCATGCAGTAATGGGAACCAAGTTCATGATACCAATTATAGGGGGAAAGGAGCTAGATCTGCATCGGCTTTTTGTGGAGGTAACCTCTCGTGGTGGTTTGGAGAAGATCATTAGAGAAAGGAGATGGAAAGAAGTGACTGCTGTTTTCAGCTTTCCCTCCACTGCTACAAATGCCTCTTTTGTACTGCGCAAGTATTATGTTTCATTGCTTCACCACTATGAACAAATTTACTTCTTTAAAGCTCAGGGTTGGGCACCTATCTCTGCTGATGCTTCACAGAGTCCATCTATAACACCAGTTCCATCTCATGGATTGGCTGAACCAGTTTTGCCATCACCTGAAAGTCAACCGGCTGGCATCCAACAGCAGAGGATAAGTTCTGCCGATATATTTCCTGGAGCAAGTCCGGCTTCATCAACAGCTTCTCCAGTGATAGGGGTCATCGATGGGAAATTTGAAAGTGGTTATCTTGTCACTGTAACTATTGGCACCGAGAAGCTAAAAGGTGTTCTTTATGAAGCTCCGCAGACCCCGGCCCGTCAAGTGCCACAGTACTTCAGTGTCATCACCAACAATACTGAGAGTACCCCTGCAGCACCAACTGTGCATCGTCGCCGCCGCAGGAAGAAATCTGAGATAAAGAAGAGAGATCCTGCTCATCCTAAACCTAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGCAGCACGCCAGACTGAAGCCTCTGCACCCAGGGAAAGACAGGGAAATCAGTAGAATGATTGGTGAATTGTGGACCAAACTAAAAGAAAATGAGAAGGCTGTTTATCAGGAGAAAGCTGTTAAAGACAAAGAGAGGTACAGAGTGGAGATGGAAGATTACCGGGAGAGATTGAAGATGGGTCAAATCATCAGTGATGCAGTGCCCATACAGCAACGGCTTCCCCATGCTGATGTAGATATGGTGGAAGCAGAAGCAAAGACTGAAATGGAAGGAGGGGAATCTCCACAAACTCCAGAGAATGAGAGTAGCTCAGGGAAAACTGATTCTGATGATGATGACAAGACAGCAGAGAAGGAGTTTGATATGGAGACATATCCAGGTGTAGGAGTAGGAGTAGAAGGTGGTGAATGTAGCAATGTGGTGGTGGTGGGTATGGAGACATCGGTGGAGGAAGAGACATACGAGTCAGGGAAGAGGGTTGAGAAGGTTGGAGTTGAAAGTGAAGAAAGCCTAGAGAATGCCATGGAGAAAGAGAAATAA 1452 46.07 MMGEQGKTEEGGGGGGGGKELGMTSQSSANQSPSLRNETVSNYHPYPPPLAKYEDIVSSPKLFMGTLEKLHAVMGTKFMIPIIGGKELDLHRLFVEVTSRGGLEKIIRERRWKEVTAVFSFPSTATNASFVLRKYYVSLLHHYEQIYFFKAQGWAPISADASQSPSITPVPSHGLAEPVLPSPESQPAGIQQQRISSADIFPGASPASSTASPVIGVIDGKFESGYLVTVTIGTEKLKGVLYEAPQTPARQVPQYFSVITNNTESTPAAPTVHRRRRRKKSEIKKRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWTKLKENEKAVYQEKAVKDKERYRVEMEDYRERLKMGQIISDAVPIQQRLPHADVDMVEAEAKTEMEGGESPQTPENESSSGKTDSDDDDKTAEKEFDMETYPGVGVGVEGGECSNVVVVGMETSVEEETYESGKRVEKVGVESEESLENAMEKEK* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14282920 14291181 + Vvi5g902 Vvi5g902 787044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g902 483 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 20 431 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 166 193 - -
Vvi5g902 483 SMART bright_3 58 149 IPR001606 GO:0003677
Vvi5g902 483 CDD ARID_HMGB9-like 59 144 IPR045303 GO:0003677
Vvi5g902 483 MobiDBLite consensus disorder prediction 408 425 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 388 438 - -
Vvi5g902 483 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 431 - -
Vvi5g902 483 SMART ARID_2 54 144 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 263 297 - -
Vvi5g902 483 ProSiteProfiles ARID domain profile. 57 148 IPR001606 GO:0003677
Vvi5g902 483 SUPERFAMILY HMG-box 283 361 IPR036910 -
Vvi5g902 483 CDD HMGB-UBF_HMG-box 291 355 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 452 483 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 1 41 - -
Vvi5g902 483 Gene3D - 49 160 IPR036431 GO:0003677
Vvi5g902 483 MobiDBLite consensus disorder prediction 21 41 - -
Vvi5g902 483 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 291 358 IPR009071 -
Vvi5g902 483 Pfam HMG (high mobility group) box 291 358 IPR009071 -
Vvi5g902 483 Pfam ARID/BRIGHT DNA binding domain 61 144 IPR001606 GO:0003677
Vvi5g902 483 SUPERFAMILY ARID-like 57 158 IPR036431 GO:0003677
Vvi5g902 483 Coils Coil 340 360 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 455 483 - -
Vvi5g902 483 SMART hmgende2 290 359 IPR009071 -
Vvi5g902 483 Gene3D High mobility group box domain 274 368 IPR036910 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14880 PF01388 ARID 1.90E-17 CL0123 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g902 - - vvi:100260501 888.256