Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g902 ATGATGGGTGAACAGGGAAAGACAGAGGAAGGTGGTGGTGGTGGTGGGGGTGGGAAGGAGTTGGGAATGACATCACAGTCTTCTGCAAATCAGAGCCCATCTCTCAGGAATGAAACAGTCTCAAACTATCATCCATATCCACCACCACTTGCAAAATACGAAGATATCGTTTCCAGTCCAAAACTTTTCATGGGCACTTTGGAGAAGCTCCATGCAGTAATGGGAACCAAGTTCATGATACCAATTATAGGGGGAAAGGAGCTAGATCTGCATCGGCTTTTTGTGGAGGTAACCTCTCGTGGTGGTTTGGAGAAGATCATTAGAGAAAGGAGATGGAAAGAAGTGACTGCTGTTTTCAGCTTTCCCTCCACTGCTACAAATGCCTCTTTTGTACTGCGCAAGTATTATGTTTCATTGCTTCACCACTATGAACAAATTTACTTCTTTAAAGCTCAGGGTTGGGCACCTATCTCTGCTGATGCTTCACAGAGTCCATCTATAACACCAGTTCCATCTCATGGATTGGCTGAACCAGTTTTGCCATCACCTGAAAGTCAACCGGCTGGCATCCAACAGCAGAGGATAAGTTCTGCCGATATATTTCCTGGAGCAAGTCCGGCTTCATCAACAGCTTCTCCAGTGATAGGGGTCATCGATGGGAAATTTGAAAGTGGTTATCTTGTCACTGTAACTATTGGCACCGAGAAGCTAAAAGGTGTTCTTTATGAAGCTCCGCAGACCCCGGCCCGTCAAGTGCCACAGTACTTCAGTGTCATCACCAACAATACTGAGAGTACCCCTGCAGCACCAACTGTGCATCGTCGCCGCCGCAGGAAGAAATCTGAGATAAAGAAGAGAGATCCTGCTCATCCTAAACCTAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGCAGCACGCCAGACTGAAGCCTCTGCACCCAGGGAAAGACAGGGAAATCAGTAGAATGATTGGTGAATTGTGGACCAAACTAAAAGAAAATGAGAAGGCTGTTTATCAGGAGAAAGCTGTTAAAGACAAAGAGAGGTACAGAGTGGAGATGGAAGATTACCGGGAGAGATTGAAGATGGGTCAAATCATCAGTGATGCAGTGCCCATACAGCAACGGCTTCCCCATGCTGATGTAGATATGGTGGAAGCAGAAGCAAAGACTGAAATGGAAGGAGGGGAATCTCCACAAACTCCAGAGAATGAGAGTAGCTCAGGGAAAACTGATTCTGATGATGATGACAAGACAGCAGAGAAGGAGTTTGATATGGAGACATATCCAGGTGTAGGAGTAGGAGTAGAAGGTGGTGAATGTAGCAATGTGGTGGTGGTGGGTATGGAGACATCGGTGGAGGAAGAGACATACGAGTCAGGGAAGAGGGTTGAGAAGGTTGGAGTTGAAAGTGAAGAAAGCCTAGAGAATGCCATGGAGAAAGAGAAATAA 1452 46.07 MMGEQGKTEEGGGGGGGGKELGMTSQSSANQSPSLRNETVSNYHPYPPPLAKYEDIVSSPKLFMGTLEKLHAVMGTKFMIPIIGGKELDLHRLFVEVTSRGGLEKIIRERRWKEVTAVFSFPSTATNASFVLRKYYVSLLHHYEQIYFFKAQGWAPISADASQSPSITPVPSHGLAEPVLPSPESQPAGIQQQRISSADIFPGASPASSTASPVIGVIDGKFESGYLVTVTIGTEKLKGVLYEAPQTPARQVPQYFSVITNNTESTPAAPTVHRRRRRKKSEIKKRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWTKLKENEKAVYQEKAVKDKERYRVEMEDYRERLKMGQIISDAVPIQQRLPHADVDMVEAEAKTEMEGGESPQTPENESSSGKTDSDDDDKTAEKEFDMETYPGVGVGVEGGECSNVVVVGMETSVEEETYESGKRVEKVGVESEESLENAMEKEK* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14282920 14291181 + Vvi5g902 Vvi5g902 787044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g902 483 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 20 431 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 166 193 - -
Vvi5g902 483 SMART bright_3 58 149 IPR001606 GO:0003677
Vvi5g902 483 CDD ARID_HMGB9-like 59 144 IPR045303 GO:0003677
Vvi5g902 483 MobiDBLite consensus disorder prediction 408 425 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 388 438 - -
Vvi5g902 483 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 431 - -
Vvi5g902 483 SMART ARID_2 54 144 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 263 297 - -
Vvi5g902 483 ProSiteProfiles ARID domain profile. 57 148 IPR001606 GO:0003677
Vvi5g902 483 SUPERFAMILY HMG-box 283 361 IPR036910 -
Vvi5g902 483 CDD HMGB-UBF_HMG-box 291 355 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 452 483 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 1 41 - -
Vvi5g902 483 Gene3D - 49 160 IPR036431 GO:0003677
Vvi5g902 483 MobiDBLite consensus disorder prediction 21 41 - -
Vvi5g902 483 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 291 358 IPR009071 -
Vvi5g902 483 Pfam HMG (high mobility group) box 291 358 IPR009071 -
Vvi5g902 483 Pfam ARID/BRIGHT DNA binding domain 61 144 IPR001606 GO:0003677
Vvi5g902 483 SUPERFAMILY ARID-like 57 158 IPR036431 GO:0003677
Vvi5g902 483 Coils Coil 340 360 - -
Vvi5g902 483 MobiDBLite consensus disorder prediction 455 483 - -
Vvi5g902 483 SMART hmgende2 290 359 IPR009071 -
Vvi5g902 483 Gene3D High mobility group box domain 274 368 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g902 - - - vvi:100260501 888.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g902 . 49 388 ARID Transcription Factor Family AT1G04880 63.0 1.4e-109 393.7
Vvi18g36 . 149 416 ARID Transcription Factor Family AT1G20910 65.3 8.6e-95 344.4
Vvi4g1345 . 1 256 ARID Transcription Factor Family AT1G20910 63.2 2.4e-89 326.2
Vvi18g149 . 20 303 ARID Transcription Factor Family AT1G76110 51.8 4.7e-81 298.5
Vvi18g36 . 139 446 ARID Transcription Factor Family AT1G76510 68.3 3.7e-115 412.1
Vvi4g1345 . 1 286 ARID Transcription Factor Family AT1G76510 66.3 6.3e-107 384.8
Vvi11g16 ECH 1 738 ARID Transcription Factor Family AT3G43240 69.3 1.9e-305 1045.0
Vvi9g26 ECH 1 744 ARID Transcription Factor Family AT3G43240 66.5 1.4e-292 1002.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14880 PF01388 ARID 1.90E-17 CL0123 Vvi TR