Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g905 ATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGGAATTTCTCTAAAGACTCAAGAACTTTATGCTCTTGTTTTTGCAACTCGCTATTTGGATATATTTACCGATTATATCTCACTTTATAATACTGTAATGAAATTAATATTCTTGGGAAGCTCGTTCTCAATCGTTTGGTACATAAGGCACCACAAGATTGTTCGAAGATCTTATGATAAGGATCAAGACACCTTTCGCCATTTTTTCCTTGTGCTTCCTTGCCTACTTTTAGCCCTAGTTATGAATGAGAAGTTCACTTTCCTAGAGGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAATATGTTTTTCTCCTCGGGATTATCAGAGTCCTAATATTAAAGAGAAGACAAGGATTTAGAGCTCTGTACATAAAATGGAAGGGACTCAAAGAAGAAAAGAAGATAAGCATCTTCTCCGGCGGCGATCCTTCTCGTTCATCTCCAGGTATGTCTTCCTTTGATTTGAAAAATTCAAAAAAAGATTTTGTGTGGAAGTATGTTATTGAAGTTGCCGGGGAGCAATATTTAAGATGTAAATTTTGCAATCAAAGATGCACGGGAGGGGTGAATAGACTCAAGCATCACTTAGCCGGAACTCATCATGGTATGAAACCATGCAACAAGGTTAGTGAAGATGCTAAATTGGAATGCAAAGAGGCATTGGCCAATTTTAAGGATCAAAAAACGAAAAGAAATGAATTGTTCCAAGAAATTGGTATGGGTCCAACTTCAATGCATGAGAGTGCCTTGTCTAAAACAATAGGGACATTAGGGAGTGGGAGTGGGAGTGGGAGTGTAAGTGGGAGTGGGGAACCTATTCCTAGGGGACCCATGAATAAATTTACCACTTCACAACCTAGACAAACTACTTTGAATTCAAAGTGGAAGCAAGAAGAAAGGAAGGAAGGAAGTGTTGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCACTTGGATATCAGGGCTTGTTCAAACATTGCTTTATGCTGATTTCTTCTATTATTATTTCCATAGCTGGAAGAACAATGAAAAGCTCCACCTACCAGCTTGA 1245 38.96 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTDYISLYNTVMKLIFLGSSFSIVWYIRHHKIVRRSYDKDQDTFRHFFLVLPCLLLALVMNEKFTFLEVLWAFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGIIRVLILKRRQGFRALYIKWKGLKEEKKISIFSGGDPSRSSPGMSSFDLKNSKKDFVWKYVIEVAGEQYLRCKFCNQRCTGGVNRLKHHLAGTHHGMKPCNKVSEDAKLECKEALANFKDQKTKRNELFQEIGMGPTSMHESALSKTIGTLGSGSGSGSVSGSGEPIPRGPMNKFTTSQPRQTTLNSKWKQEERKEGSVAYRALYILNWIYRYFTEPHYVHWITWISGLVQTLLYADFFYYYFHSWKNNEKLHLPA* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14365852 14385345 + Vvi5g905 Vvi5g905 787047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g905 414 ProSiteProfiles Zinc finger BED-type profile. 210 265 IPR003656 GO:0003677
Vvi5g905 414 ProSitePatterns ER lumen protein retaining receptor signature 1. 31 48 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PRINTS ER lumen protein retaining receptor signature 4 23 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PRINTS ER lumen protein retaining receptor signature 31 51 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PRINTS ER lumen protein retaining receptor signature 52 68 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PRINTS ER lumen protein retaining receptor signature 122 142 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PRINTS ER lumen protein retaining receptor signature 144 158 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 MobiDBLite consensus disorder prediction 330 344 - -
Vvi5g905 414 Pfam BED zinc finger 215 252 IPR003656 GO:0003677
Vvi5g905 414 ProSitePatterns Zinc finger C2H2 type domain signature. 230 252 IPR013087 -
Vvi5g905 414 ProSitePatterns ER lumen protein retaining receptor signature 2. 128 137 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 358 414 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 165 IPR000133 GO:0006621|GO:0016021|GO:0046923
Vvi5g905 414 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR 358 414 - -
Vvi5g905 414 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR 1 165 - -
Vvi5g905 414 MobiDBLite consensus disorder prediction 309 348 - -
Vvi5g905 414 Pfam ER lumen protein retaining receptor 28 164 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g905 K10949 KDELR; ER lumen protein retaining receptor - vvi:100259001 307.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g905 Blo01g00331 . . Bda08g00036 . . . Bma05g01292 . Cmo17g00103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01142 . . . . . . . Cma17g00100 . Car17g00090 Cpe12g00089 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1