Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g906 ATGGCAGCTCTGGCCAAGGTGGTGGCAATCATGATAGCGTCTATGGCCATCCTAGCGACGGTGGCTGGCGGGGCTACCCCAGTTATAGGCCCAACCCCCGTAGTGGGAGGTGGGACAACCCAAATCCCAGCAGAGGGAGGAGCAAGCTGGTGTGTGGCTAGGAGCGACGCCAGCGAGCAGGGTTTGCAAACAGCCTTGGACTACGCGTGTGGATCAGGCGCAGATTGCACTCCCATACAGACGTCCGGACTCTGTTATCTCCCAAACACCCTTCAGGCCCATGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGTCCATGGCTCCTGGCTCTTGCGACTTCGCCGGCACCGCCAACATTGCCCGCACTGACCCCAGCTATGGATCTTGCGTCTACCCATCTTCTCTAAGCACGGCAGGAGGGATGTCTACTCCAGCTTCAACACCATCCACACCAGGTGTTATATATCCACCACCATCGCCGATTAGTTCTACACCACTCGCAGGCATTTCTGGAGGATACAATCCTGGCTTGGGCCCTACAGTACCAACCACCAACAATTCTGTGACTTCTATGAAGTTGTCTGTTTTTTCTATCTTAATGCACATCTCTTTCTTTCTTGCCTTGCTATTTACTTTTCAACCAATGTTAGTGTTCTAA 663 53.54 MAALAKVVAIMIASMAILATVAGGATPVIGPTPVVGGGTTQIPAEGGASWCVARSDASEQGLQTALDYACGSGADCTPIQTSGLCYLPNTLQAHASYAFNSFFQRKSMAPGSCDFAGTANIARTDPSYGSCVYPSSLSTAGGMSTPASTPSTPGVIYPPPSPISSTPLAGISGGYNPGLGPTVPTTNNSVTSMKLSVFSILMHISFFLALLFTFQPMLVF* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14513413 14516745 + Vvi5g906 Vvi5g906 787048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g906 220 PANTHER BETA-1,3 GLUCANASE 20 207 IPR044788 -
Vvi5g906 220 Gene3D - 46 139 - -
Vvi5g906 220 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 20 207 - -
Vvi5g906 220 SMART X8_cls 49 133 IPR012946 -
Vvi5g906 220 Pfam X8 domain 50 119 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g906 - - - vvi:100260517 392.889
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g906 . Blo12g00115 Bda03g01126 . . . Bma04g01055 . Cmo08g00991 . . . . . . . . . . . . . . . Cla06g00760 . Cec06g0822 . Clacu06g0812 Cmu06g0786 . . . . . . . Chy05g00560 . . . . . . . . . Sed04g2068 . . Cma08g01021 . Car08g00898 . . Cpe17g00255 Bhi12g01498 Tan06g2300 Cmetu05g0712 Lac12g2044 Hepe03g0359 . Lcy13g0466 . . . . . . . Lsi09g01139 . . Cme05g00718
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009076 1 1 1 1 0 1 1 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34