Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g908 ATGTTTGGGGGCCAAATATCCAGTACTGTTTGTTGTGTGGAATGTGGGCACTCCTCAACAGTGTATGAGCCATTTTTGGATCTCTCGCTTCCAGTTCCAACAAAGAAGCCTCCATCTAGGAAGACCCAACCAGTATCTCGCCCTAAGAAAACAAAGCTGCCACCAAAGAAAGCTGGAAGGGTTCGTTCAAAAGTAAACAAGGATGCAGATTCTCTAGTGGCTCTAAGCGTTCAACACCCATCATCTGATGGTGATTCTTCCAACCAAATTCAATCTAGTGCACCTGTTGCAGAAAAATTGGTGTCATCTTCAGGTGATTCTGCGGGGTCAGATTTAGTTTCCCCATGTGCCGTGGCTGATGTCAAGGATTCAGTTTCAAAGAATATCTCTACTTCGGAAGAATTTGAGAACAAGCAAGATAATGTTCAGAATGATGTCTTATTGCAAAATGCCTCTGAATTTAGTAGTCAGGTTTATCCACACAAGGGAGAGCCAAATCTAAAAATAGATTCTTGTTCTGCAAATTCATGGGAAGAAGAACTCCCAGTGCAAATTCAAAGCGATAACAGCTTCAACGCAAATGAAGTTGTGGGAACTGGTTTCATAAATAGAAACAGCAGCGAGTCTGATCCAGATGAAGTTGATAATTCCAATTCCATGGTGTCAATAGATAGTTGTCTGACCTATTTTACAAAGCCAGAGCTTCTCTCCAATGAACATGCTTGGCATTGTGAGAATTGTTCAAAAATTTTGTGGGACCAGAGGATAAAAACAAGGACCAACCTGCCAAATACTATATCTAAGATTCAGATGAATGGAAAGCTATCACATTCTTCAGATACTTATAAAACCTGCAGTCAAGCAAGCTTAAGTGATCCAGCCAGTGATTCATGTAGTGTTCATGAGCCTAATAGTGTTGGATGTAACACTGGTAAGCAAAGAAATTCACAGATGTTAACTGGGGAGCTTGAATCAGAAGAAGATGAGGACAAGGAGATGGATTCTGAAAGTGTAAAAGTGAAGAGGGATGCAACTAAAAGGATTCTCATTAATAAGGCACCACCTATTCTGACCATTCACCTGAAGAGGTTCAGCCAAGATGCTCGTGGGCGCTATAATAAATTGAATGGACATGTGGTTTTCAAAGATTCAATTGATCTTAGGCCATTTATGGAACCCAGGTGTGTAGAGAAAGGAAAATATGAATATCGGCTGGTTGGAGTAGTGGAGCATTCTGGAAGCATGAGAATGGGGCACTATGTTGCATATGTGAGAGGAGGGGAGAGGAGGAGCAGTGGGCAGGCTAAAAAAGAAAGTGGACGGGGTGTGTGGTATTATGCTAGTGATGCTTCTGTGCGTGAAACTTCCCTGGATGAAGTTCTTCGATGTGAGGCCTACATCTTGTTCTATGAAAAGATATAA 1422 41.63 MFGGQISSTVCCVECGHSSTVYEPFLDLSLPVPTKKPPSRKTQPVSRPKKTKLPPKKAGRVRSKVNKDADSLVALSVQHPSSDGDSSNQIQSSAPVAEKLVSSSGDSAGSDLVSPCAVADVKDSVSKNISTSEEFENKQDNVQNDVLLQNASEFSSQVYPHKGEPNLKIDSCSANSWEEELPVQIQSDNSFNANEVVGTGFINRNSSESDPDEVDNSNSMVSIDSCLTYFTKPELLSNEHAWHCENCSKILWDQRIKTRTNLPNTISKIQMNGKLSHSSDTYKTCSQASLSDPASDSCSVHEPNSVGCNTGKQRNSQMLTGELESEEDEDKEMDSESVKVKRDATKRILINKAPPILTIHLKRFSQDARGRYNKLNGHVVFKDSIDLRPFMEPRCVEKGKYEYRLVGVVEHSGSMRMGHYVAYVRGGERRSSGQAKKESGRGVWYYASDASVRETSLDEVLRCEAYILFYEKI* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14531097 14546195 - Vvi5g908 Vvi5g908 787050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g908 473 SUPERFAMILY Cysteine proteinases 1 472 IPR038765 -
Vvi5g908 473 Gene3D Cysteine proteinases 1 262 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 325 472 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 206 266 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 1 57 - -
Vvi5g908 473 MobiDBLite consensus disorder prediction 75 110 - -
Vvi5g908 473 MobiDBLite consensus disorder prediction 309 339 - -
Vvi5g908 473 MobiDBLite consensus disorder prediction 42 60 - -
Vvi5g908 473 MobiDBLite consensus disorder prediction 29 110 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 325 472 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 206 266 - -
Vvi5g908 473 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 57 - -
Vvi5g908 473 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 473 IPR028889 -
Vvi5g908 473 CDD Peptidase_C19K 324 471 - -
Vvi5g908 473 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 403 420 IPR018200 GO:0004843|GO:0006511
Vvi5g908 473 Pfam Ubiquitin carboxyl-terminal hydrolase 2 470 IPR001394 GO:0004843|GO:0016579
Vvi5g908 473 Gene3D Cysteine proteinases 263 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g908 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - vvi:100255551 400.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35