Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g911 ATGGAGATTGGTTGCTGCAAGAAGGGGCCTGGTTATGCCACTCCACTCGAAGCCATGTCTGGTCCCAGAGAATCTCTTCTTTATGTCACTTGCATCTATACAGGATCAGGAAAAGGGAAGCCTGACTACCTTGCTACAGTGGATGTAGATCCAAGCTCACCTTCTTATTCAAAAGTTATCCACCGGCTTCCTGTACCTTATTTAGGGGATGAACTACACCACTCTGGGTGGAACTCCTGCAGCTCTTGCCATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAGTTTGCATAAAGTTGTTGAGCCTGAAGACATTCTGAAGAAGACTGGGTTAGCATACCCACACACAGCTCATTGCCTTGCTTCTGGTGATATAATGGTTTCATGCCTTGGAGATGGAGATGGAAAAGCTGAAGGAAGTGGATTTCTTCTACTTGACTCAGAATTCAATGTGAAAGGAAGATGGGAGAAACCAGGGCATAGTCCGTCTTTTGGCTACGATTTCTGGTACCAACCCCGTCACAAGACAATGATCAGTTCATCATGGGGAGCACCTGCAGCTTTCACTAAAGGTTTCAATCTTCAGCATGTGTCAGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCCTTAACAAGCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGGTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGACATGCCGTCTCTTATAACTGATTTTCTGATCTCTCTCGATGACCGTTATCTATACTTGGCAAATTGGCTTCATGGAGATGTGAGACAGTACAATATTGAGGACCCTAAGAATCCTGTATTAACTGGTCAAGTATGGGTTGGGGGACTGATTCAGAAGGGAAGCCCTATAGTGGCGTTGGCAGAAGATGGTACAACATGGCAGTCTGAGGTTCCAGAGGTCCAGGGAAAAAGGTTGCGAGGGGGACCTCAAATGATCCAGTTAAGTTTAGATGGGAAGCGGCTTTATGTTACCAACTCACTCTTCAGTACATGGGATCACCAGTTTTATCCTGATCTCCCACGGGAAGGATCTCACATGTTGCAGATTGATGTTGACACTGAGAAAGGTGGTCTGGTCATAAACCCCAATTTTTTTGTCGACTTCGGGTCTGAACCTGACGGTCCTTCGCTGGCCCATGAGATGAGATATCCTGGGGGTGACTGCACCTCTGATATATGGGTTTAA 1422 45.71 MEIGCCKKGPGYATPLEAMSGPRESLLYVTCIYTGSGKGKPDYLATVDVDPSSPSYSKVIHRLPVPYLGDELHHSGWNSCSSCHGDSSQERRFLVLPSLVSGRIYAIDTQKNPRGPSLHKVVEPEDILKKTGLAYPHTAHCLASGDIMVSCLGDGDGKAEGSGFLLLDSEFNVKGRWEKPGHSPSFGYDFWYQPRHKTMISSSWGAPAAFTKGFNLQHVSDGLYGKHLYVYSWPEGELKQTLDLGDSGLLPLEIRFLHDPSKDTGFVGCALTSNMVRFFKTPDGSWSHEVAISVKPLKVQNWILPDMPSLITDFLISLDDRYLYLANWLHGDVRQYNIEDPKNPVLTGQVWVGGLIQKGSPIVALAEDGTTWQSEVPEVQGKRLRGGPQMIQLSLDGKRLYVTNSLFSTWDHQFYPDLPREGSHMLQIDVDTEKGGLVINPNFFVDFGSEPDGPSLAHEMRYPGGDCTSDIWV* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14610219 14614850 + Vvi5g911 Vvi5g911 787053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g911 473 Pfam 56kDa selenium binding protein (SBP56) 6 473 IPR008826 GO:0008430
Vvi5g911 473 PANTHER SELENIUM-BINDING PROTEIN 1 4 473 - -
Vvi5g911 473 PANTHER METHANETHIOL OXIDASE 4 473 IPR008826 GO:0008430
Vvi5g911 473 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 42 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g911 K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] - vvi:100265737 999.964
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g911 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .