Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g917 ATGAAACCGAGTAAACTAAAAATTATGGAGAAAACCTCTAGAACAGATCCAGAAAGCATAGGGAGCAAAAAAAAAAAAAAAACGCATTTTTTTTTGTGGTGGATTAAATCTTCAGTCTTCCCGTATGTTTATTTTGAAAAATATTTTAATTTGTCATCTTTTGTTACTGGGCTTTGTGAAGGTAATGCATCTCTTGGGAGAACGACATATGTTCATTGCAAGGGTGGTCGGGGCCGCAACACAACCATTGTTCTCTATTACCTGGTGGAACACAAACAGATGACACCTGATGCTACATACAACTATGTGAAATCCATCAGGCCAAGGGTGGTCCTAGCCTCGGCTCAGTGGAAGGCTGTTCAAGACTATTATCTGCAGAAAGTGAAGAAAACTAAAAGTTCTGGCTGCATTAACAACAGAGTCAGAAAGTCTCCATTCTTCCCATCAAAACAATATGTTGTAGCCTTTGATGATGACTCCATTGACATAGTAACAGAGTCAGATCTTGATGGATATGAGTCATATGGCACAAGCTGTGACTCTATAATCATGGTAACACAATCAGAGCTTGATGGATACGACTCAAGCTTAGGAAATCCACATACATCAATTGAAGGAATAAAGTAA 627 38.6 MKPSKLKIMEKTSRTDPESIGSKKKKKTHFFLWWIKSSVFPYVYFEKYFNLSSFVTGLCEGNASLGRTTYVHCKGGRGRNTTIVLYYLVEHKQMTPDATYNYVKSIRPRVVLASAQWKAVQDYYLQKVKKTKSSGCINNRVRKSPFFPSKQYVVAFDDDSIDIVTESDLDGYESYGTSCDSIIMVTQSELDGYDSSLGNPHTSIEGIK* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14942826 14946221 + Vvi5g917 Vvi5g917 787059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g917 208 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8 ISOFORM X1-RELATED 61 174 - -
Vvi5g917 208 Gene3D Protein tyrosine phosphatase superfamily 15 132 IPR029021 -
Vvi5g917 208 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 46 118 IPR000387 GO:0016311|GO:0016791
Vvi5g917 208 Pfam Dual specificity phosphatase, catalytic domain 25 124 IPR000340 GO:0008138|GO:0016311
Vvi5g917 208 PANTHER - 61 174 - -
Vvi5g917 208 MobiDBLite consensus disorder prediction 1 21 - -
Vvi5g917 208 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 128 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g917 - - - vvi:100247978 239.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .