Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g92 ATGGAGAGTAGCGTGCCAGGTCGACTTGCAGGATGGGATATTCATGGCTTCCGTACAATGGAAGATTTGGATGTTGACAGCATATTGGAAGAAGCCAAGGGGAGGTGGCTACGGCCAAATGAAATTCATGCAATACTTTGTAACTACACTCTTTTCACCGTCAATGTCAAGCCAGTGAATTTGCCTCCAAGTGGCAAAATTGTATTGTTTGACCGTAGAATGCTGCGGAACTTTCGGAAAGATGGTCATAACTGGAAGAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAACATTTAAAAGTTGGTAATGACGAAAGGATCCATGTTTATTATGCACATGGCCAAGATAACCCGACCTTTGTTCGCAGGTGTTACTGGCTTCTTGATAAGACACTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCGCAGGGTTCTCCAGTCACACCTGTGAATTCCAGTCCAAGTCCTAATTCAGCCACCTCTGACCCATCTGCTCCTTGGCTTTTATCAGAAGAAACTGATTCTGGGACTGGTAGTACATACCGTGCTGGTGAGAAAGAACATCAAGAGCCTAGGGATAGTATAACTGTCAGAAATTATGAGATGAGAATTCATGAGCTTAATACACTTGAATGGGATGAGCTTTTGGTGTCAAATGATCCCAACAATTCAATGGCACCTAAGGAAGGAAAAATTTCATCCTTTGAGCAACAGAATCAACATGTAATAACAAGTTCCAACAGTTATAATAGGCCCCATTCAACCAATGATTTGCCAGTAGGAATTTCTCCTTTGGGGAATCCTGCGGAATCAATTGCTGGGAATGAATCTGCCCATTTCAATTTTCTGGATGATGTTTACTTTCAGAAAATAGGGGGTCAAGTGAATCCAAATGGGCAGAGAAGGGATTCTGTTGCAGTGGGAACCGGTGATCCTGTGGACATTTTGCTCAAAGATAGTTTGGAACCTCAGGACAGTTTTGGAAGGTGGATGAACTATATCATGACCGATTCTCCAGTATCAGTAGATGATCCATCACTTGGTTCCCCTGTTTCAAGTAGTCATGATTCAGTAGTCTCTGCAGCGGGGAATCATCAACAATCTTCTGTTCCTGATACAATATTCAGTATAACTGACTTCTCACCTTCATGGGCCATTTCAACTGAAAAAACCAAGATCCTGGTGATTGGTTTTCTTCATGAAAATTATGCAGATCTTGCAAAGTCCAATCTATTTTTTGTCTGTGGTGATGTATGTGTTCCTGCAGAAATCATCCAACTTGGGGTATTTCGATGTTTGGTACCACCACATGCCCCTGGATTAGTAAATTTTTATTTGAGTTTTGATGGCCATAAACCTATCAGCCAAGTTGTGACTTTTGAGTATCGGGCTCCTTTATTGTATAACCAGACAGTTTCTTCAGAAGTTGAAACCAATTGGGAGGAGTTTCAGTTTCAGATGAGGCTTTCTCATTTACTTTTCTCTACATCCAAGGGCCTTAACATTATGTCCAGCAAAATATCACCAAATGCCCTGAGGGAAGCAAAGAATTTTGTCAAAAAGACCTCTTTCATTGCCAGGAATTGGGCAAATTTGACCAAGACAATTGGAGACAACAGAATCTTGGTTTCACAAGCAAAAGACCTTTTGTTTGAGTTTGCATTGTTAAACAAATTACAGGAATGGCTAGTGGAAAGAATTGTTGAGGGGGGTAAAACCTCAGAGCGCGATGGTCAGGGTCAAGGGGTAATCCATTTGTGTGCTATGCTAGGCTATACACGAGCTGTTTATCTATATTCACTATCAGGCTTATCATTGGATTACCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCTGCATACTATGGAAGGCAGAAAATGGTTGCCGTGCTTTTATCTGCAGGGGCGAAGCCCAACTTGGTCACAGACCCCACCTCAGAAAACCCTGGTGGATGCACTGCTGCTGATCTTGCATCTAAGGAAGGTCATGATGGCTTAGCAGCTTATCTTGCAGAAAAGGGGTTAGTAGAACAGTTCAACGATATGACCTTGGCCGGAAATGTCAGTGGTTCACTGCAAGTTAGCACAACCGAACAAATAAATTCAGAGAACCTCAGTGAGGAGGAGATGAATTTAAAGGATACTTTGGCAGCATATCGGACAGCTGCTGATGCAGCAGCACGTATACAGGTTGCATTCAGGGAGCGCTCACTAAAGTTAAGGACAAAAGCAGTTGAAAATTGCAATCCAGAGATTGAGGCACGCAATATAGTCGCAGCAATGAGGATTCAGCATGCCTTTCGCAACTATGAGACACGAAAAAGGATGGCCGCTGCTGCTCGAATTCAACATAGGTTTCGTAGTTGGAAGATACGAAAAGAGTTCCTCAATATGCGTCGCCAAGCAATTAAAATTCAAGCTGTTTTCCGGGGCTTCCAAGTGCGGAGGCAGTACCGCAAGATTCTATGGTCAGTTGGAGTCCTTGAGAAGGTGATTCTGCGCTGGCGTATGAAGAGGAAAGGCTTCCGTGGGCTTCAGGTTGACACTGTTGATCAACTTCAAGAAAGTGACACAGAGGAGGACTTCTTCCGGGCCAGCAGGAGACAAGCTGAAGACCGTGTTGAGAGATCTGTTATACGTGTTCAAGCGATGTTCCGTTCAAAGAAAGCTCAAGAAGAATACCGGAGAATGAAGTTGGCCCACAATGAAGCAAAGCTGGAATTTGAAGGTTTTATTGATCCTGATACCAACATGGATGGATGA 2784 43.07 MESSVPGRLAGWDIHGFRTMEDLDVDSILEEAKGRWLRPNEIHAILCNYTLFTVNVKPVNLPPSGKIVLFDRRMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPTFVRRCYWLLDKTLEHIVLVHYRETQESQGSPVTPVNSSPSPNSATSDPSAPWLLSEETDSGTGSTYRAGEKEHQEPRDSITVRNYEMRIHELNTLEWDELLVSNDPNNSMAPKEGKISSFEQQNQHVITSSNSYNRPHSTNDLPVGISPLGNPAESIAGNESAHFNFLDDVYFQKIGGQVNPNGQRRDSVAVGTGDPVDILLKDSLEPQDSFGRWMNYIMTDSPVSVDDPSLGSPVSSSHDSVVSAAGNHQQSSVPDTIFSITDFSPSWAISTEKTKILVIGFLHENYADLAKSNLFFVCGDVCVPAEIIQLGVFRCLVPPHAPGLVNFYLSFDGHKPISQVVTFEYRAPLLYNQTVSSEVETNWEEFQFQMRLSHLLFSTSKGLNIMSSKISPNALREAKNFVKKTSFIARNWANLTKTIGDNRILVSQAKDLLFEFALLNKLQEWLVERIVEGGKTSERDGQGQGVIHLCAMLGYTRAVYLYSLSGLSLDYRDKFGWTALHWAAYYGRQKMVAVLLSAGAKPNLVTDPTSENPGGCTAADLASKEGHDGLAAYLAEKGLVEQFNDMTLAGNVSGSLQVSTTEQINSENLSEEEMNLKDTLAAYRTAADAAARIQVAFRERSLKLRTKAVENCNPEIEARNIVAAMRIQHAFRNYETRKRMAAAARIQHRFRSWKIRKEFLNMRRQAIKIQAVFRGFQVRRQYRKILWSVGVLEKVILRWRMKRKGFRGLQVDTVDQLQESDTEEDFFRASRRQAEDRVERSVIRVQAMFRSKKAQEEYRRMKLAHNEAKLEFEGFIDPDTNMDG* 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 986561 999557 - Vvi5g92 Vvi5g92 786234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g92 927 MobiDBLite consensus disorder prediction 145 186 - -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 782 811 IPR000048 GO:0005515
Vvi5g92 927 Coils Coil 894 914 - -
Vvi5g92 927 SMART iq_5 804 826 IPR000048 GO:0005515
Vvi5g92 927 SMART iq_5 880 902 IPR000048 GO:0005515
Vvi5g92 927 SMART iq_5 781 803 IPR000048 GO:0005515
Vvi5g92 927 Gene3D - 783 829 - -
Vvi5g92 927 ProSiteProfiles Ankyrin repeat region circular profile. 618 646 - -
Vvi5g92 927 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Vvi5g92 927 SUPERFAMILY E set domains 383 469 IPR014756 -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 805 829 IPR000048 GO:0005515
Vvi5g92 927 Gene3D Immunoglobulins 377 472 IPR013783 -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 766 792 IPR000048 GO:0005515
Vvi5g92 927 ProSiteProfiles IQ motif profile. 882 910 IPR000048 GO:0005515
Vvi5g92 927 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vvi5g92 927 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 921 - -
Vvi5g92 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 832 IPR027417 -
Vvi5g92 927 ProSiteProfiles Ankyrin repeat profile. 618 650 IPR002110 GO:0005515
Vvi5g92 927 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vvi5g92 927 SMART ANK_2a 657 688 IPR002110 GO:0005515
Vvi5g92 927 SMART ANK_2a 618 647 IPR002110 GO:0005515
Vvi5g92 927 Pfam Ankyrin repeats (3 copies) 561 647 IPR002110 GO:0005515
Vvi5g92 927 Gene3D - 531 681 IPR036770 -
Vvi5g92 927 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 921 - -
Vvi5g92 927 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vvi5g92 927 MobiDBLite consensus disorder prediction 187 203 - -
Vvi5g92 927 SUPERFAMILY Ankyrin repeat 569 684 IPR036770 -
Vvi5g92 927 MobiDBLite consensus disorder prediction 145 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g92 K21596 CAMTA; calmodulin-binding transcription activator - vvi:100243111 1778.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14883 PF03859 CG-1 7.30E-45 No_clan Vvi TF