Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g92 ATGGAGAGTAGCGTGCCAGGTCGACTTGCAGGATGGGATATTCATGGCTTCCGTACAATGGAAGATTTGGATGTTGACAGCATATTGGAAGAAGCCAAGGGGAGGTGGCTACGGCCAAATGAAATTCATGCAATACTTTGTAACTACACTCTTTTCACCGTCAATGTCAAGCCAGTGAATTTGCCTCCAAGTGGCAAAATTGTATTGTTTGACCGTAGAATGCTGCGGAACTTTCGGAAAGATGGTCATAACTGGAAGAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAACATTTAAAAGTTGGTAATGACGAAAGGATCCATGTTTATTATGCACATGGCCAAGATAACCCGACCTTTGTTCGCAGGTGTTACTGGCTTCTTGATAAGACACTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCGCAGGGTTCTCCAGTCACACCTGTGAATTCCAGTCCAAGTCCTAATTCAGCCACCTCTGACCCATCTGCTCCTTGGCTTTTATCAGAAGAAACTGATTCTGGGACTGGTAGTACATACCGTGCTGGTGAGAAAGAACATCAAGAGCCTAGGGATAGTATAACTGTCAGAAATTATGAGATGAGAATTCATGAGCTTAATACACTTGAATGGGATGAGCTTTTGGTGTCAAATGATCCCAACAATTCAATGGCACCTAAGGAAGGAAAAATTTCATCCTTTGAGCAACAGAATCAACATGTAATAACAAGTTCCAACAGTTATAATAGGCCCCATTCAACCAATGATTTGCCAGTAGGAATTTCTCCTTTGGGGAATCCTGCGGAATCAATTGCTGGGAATGAATCTGCCCATTTCAATTTTCTGGATGATGTTTACTTTCAGAAAATAGGGGGTCAAGTGAATCCAAATGGGCAGAGAAGGGATTCTGTTGCAGTGGGAACCGGTGATCCTGTGGACATTTTGCTCAAAGATAGTTTGGAACCTCAGGACAGTTTTGGAAGGTGGATGAACTATATCATGACCGATTCTCCAGTATCAGTAGATGATCCATCACTTGGTTCCCCTGTTTCAAGTAGTCATGATTCAGTAGTCTCTGCAGCGGGGAATCATCAACAATCTTCTGTTCCTGATACAATATTCAGTATAACTGACTTCTCACCTTCATGGGCCATTTCAACTGAAAAAACCAAGATCCTGGTGATTGGTTTTCTTCATGAAAATTATGCAGATCTTGCAAAGTCCAATCTATTTTTTGTCTGTGGTGATGTATGTGTTCCTGCAGAAATCATCCAACTTGGGGTATTTCGATGTTTGGTACCACCACATGCCCCTGGATTAGTAAATTTTTATTTGAGTTTTGATGGCCATAAACCTATCAGCCAAGTTGTGACTTTTGAGTATCGGGCTCCTTTATTGTATAACCAGACAGTTTCTTCAGAAGTTGAAACCAATTGGGAGGAGTTTCAGTTTCAGATGAGGCTTTCTCATTTACTTTTCTCTACATCCAAGGGCCTTAACATTATGTCCAGCAAAATATCACCAAATGCCCTGAGGGAAGCAAAGAATTTTGTCAAAAAGACCTCTTTCATTGCCAGGAATTGGGCAAATTTGACCAAGACAATTGGAGACAACAGAATCTTGGTTTCACAAGCAAAAGACCTTTTGTTTGAGTTTGCATTGTTAAACAAATTACAGGAATGGCTAGTGGAAAGAATTGTTGAGGGGGGTAAAACCTCAGAGCGCGATGGTCAGGGTCAAGGGGTAATCCATTTGTGTGCTATGCTAGGCTATACACGAGCTGTTTATCTATATTCACTATCAGGCTTATCATTGGATTACCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCTGCATACTATGGAAGGCAGAAAATGGTTGCCGTGCTTTTATCTGCAGGGGCGAAGCCCAACTTGGTCACAGACCCCACCTCAGAAAACCCTGGTGGATGCACTGCTGCTGATCTTGCATCTAAGGAAGGTCATGATGGCTTAGCAGCTTATCTTGCAGAAAAGGGGTTAGTAGAACAGTTCAACGATATGACCTTGGCCGGAAATGTCAGTGGTTCACTGCAAGTTAGCACAACCGAACAAATAAATTCAGAGAACCTCAGTGAGGAGGAGATGAATTTAAAGGATACTTTGGCAGCATATCGGACAGCTGCTGATGCAGCAGCACGTATACAGGTTGCATTCAGGGAGCGCTCACTAAAGTTAAGGACAAAAGCAGTTGAAAATTGCAATCCAGAGATTGAGGCACGCAATATAGTCGCAGCAATGAGGATTCAGCATGCCTTTCGCAACTATGAGACACGAAAAAGGATGGCCGCTGCTGCTCGAATTCAACATAGGTTTCGTAGTTGGAAGATACGAAAAGAGTTCCTCAATATGCGTCGCCAAGCAATTAAAATTCAAGCTGTTTTCCGGGGCTTCCAAGTGCGGAGGCAGTACCGCAAGATTCTATGGTCAGTTGGAGTCCTTGAGAAGGTGATTCTGCGCTGGCGTATGAAGAGGAAAGGCTTCCGTGGGCTTCAGGTTGACACTGTTGATCAACTTCAAGAAAGTGACACAGAGGAGGACTTCTTCCGGGCCAGCAGGAGACAAGCTGAAGACCGTGTTGAGAGATCTGTTATACGTGTTCAAGCGATGTTCCGTTCAAAGAAAGCTCAAGAAGAATACCGGAGAATGAAGTTGGCCCACAATGAAGCAAAGCTGGAATTTGAAGGTTTTATTGATCCTGATACCAACATGGATGGATGA 2784 43.07 MESSVPGRLAGWDIHGFRTMEDLDVDSILEEAKGRWLRPNEIHAILCNYTLFTVNVKPVNLPPSGKIVLFDRRMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPTFVRRCYWLLDKTLEHIVLVHYRETQESQGSPVTPVNSSPSPNSATSDPSAPWLLSEETDSGTGSTYRAGEKEHQEPRDSITVRNYEMRIHELNTLEWDELLVSNDPNNSMAPKEGKISSFEQQNQHVITSSNSYNRPHSTNDLPVGISPLGNPAESIAGNESAHFNFLDDVYFQKIGGQVNPNGQRRDSVAVGTGDPVDILLKDSLEPQDSFGRWMNYIMTDSPVSVDDPSLGSPVSSSHDSVVSAAGNHQQSSVPDTIFSITDFSPSWAISTEKTKILVIGFLHENYADLAKSNLFFVCGDVCVPAEIIQLGVFRCLVPPHAPGLVNFYLSFDGHKPISQVVTFEYRAPLLYNQTVSSEVETNWEEFQFQMRLSHLLFSTSKGLNIMSSKISPNALREAKNFVKKTSFIARNWANLTKTIGDNRILVSQAKDLLFEFALLNKLQEWLVERIVEGGKTSERDGQGQGVIHLCAMLGYTRAVYLYSLSGLSLDYRDKFGWTALHWAAYYGRQKMVAVLLSAGAKPNLVTDPTSENPGGCTAADLASKEGHDGLAAYLAEKGLVEQFNDMTLAGNVSGSLQVSTTEQINSENLSEEEMNLKDTLAAYRTAADAAARIQVAFRERSLKLRTKAVENCNPEIEARNIVAAMRIQHAFRNYETRKRMAAAARIQHRFRSWKIRKEFLNMRRQAIKIQAVFRGFQVRRQYRKILWSVGVLEKVILRWRMKRKGFRGLQVDTVDQLQESDTEEDFFRASRRQAEDRVERSVIRVQAMFRSKKAQEEYRRMKLAHNEAKLEFEGFIDPDTNMDG* 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 986561 999557 - Vvi5g92 Vvi5g92 786234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g92 927 MobiDBLite consensus disorder prediction 145 186 - -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 782 811 IPR000048 GO:0005515
Vvi5g92 927 Coils Coil 894 914 - -
Vvi5g92 927 SMART iq_5 804 826 IPR000048 GO:0005515
Vvi5g92 927 SMART iq_5 880 902 IPR000048 GO:0005515
Vvi5g92 927 SMART iq_5 781 803 IPR000048 GO:0005515
Vvi5g92 927 Gene3D - 783 829 - -
Vvi5g92 927 ProSiteProfiles Ankyrin repeat region circular profile. 618 646 - -
Vvi5g92 927 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Vvi5g92 927 SUPERFAMILY E set domains 383 469 IPR014756 -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 805 829 IPR000048 GO:0005515
Vvi5g92 927 Gene3D Immunoglobulins 377 472 IPR013783 -
Vvi5g92 927 ProSiteProfiles IQ motif profile. 766 792 IPR000048 GO:0005515
Vvi5g92 927 ProSiteProfiles IQ motif profile. 882 910 IPR000048 GO:0005515
Vvi5g92 927 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vvi5g92 927 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 921 - -
Vvi5g92 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 832 IPR027417 -
Vvi5g92 927 ProSiteProfiles Ankyrin repeat profile. 618 650 IPR002110 GO:0005515
Vvi5g92 927 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vvi5g92 927 SMART ANK_2a 657 688 IPR002110 GO:0005515
Vvi5g92 927 SMART ANK_2a 618 647 IPR002110 GO:0005515
Vvi5g92 927 Pfam Ankyrin repeats (3 copies) 561 647 IPR002110 GO:0005515
Vvi5g92 927 Gene3D - 531 681 IPR036770 -
Vvi5g92 927 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 921 - -
Vvi5g92 927 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vvi5g92 927 MobiDBLite consensus disorder prediction 187 203 - -
Vvi5g92 927 SUPERFAMILY Ankyrin repeat 569 684 IPR036770 -
Vvi5g92 927 MobiDBLite consensus disorder prediction 145 203 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14883 PF03859 CG-1 7.30E-45 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g92 K21596 - vvi:100243111 1778.07