Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g920 ATGGAAATTCAATCCAATGAGCTGAATTGCTCCTCCCAAGCGGTTCAAAATTGTTTCCTGAATCCCAATTGGGACAACTCAATGGATCAGAGCGATCCCTTTGAGTCCGCCTTGAGCTCCATTGTGTCTTCTCCGGTTGGGTCCAGCGGCCACGGCAACACCAACAACAGTAACAACACTTCTTGCTATAACACGCCATTGAATTCTCCTCCCAAGCTCAATCTCTCCATCATGGATCATCAGCAACATCAGATCAGGACCAATTTCCCCACTAATCATTTACCAACACATCCAAGTCTGGCACCCTTTCCAGCTGATCCCGGATTCGCCGAGAGGGCTGCGAGATTTTCCTGCTTTGGCACTGGGAATTTCTCAGGCCTAAGTGCCCAATTCGGCCTCAATGATACTGAACTGCCATATAGATCATCTACTGGATGGAAATTGGGAGATTCCCGCGAGGAATCTTCGGTTTCTGAGCAGATCCCAGGTGGGGAAACCAGCCTAAAAGGCCAGAATGATGCCAATGGAAGAAAAAGAAAATCGATTCCCAGAGGCAAAGCCAAGGAAGTCCCTTCATCCCCCTCTGCCAAAGATGCGAAGGTTGCCTCAGACAAGGATGAATCGAATGCCAAGAGAAGCAAACCAGATGAAGGTAGTGGGAGCGAAAAGGATGCTGCCAAAGCGAAGGCAGAGGCAAATGGGAGTACCAAATCTGCAGGGGATGGGAATCAAAAACAAAGCAAGGATAATCCTAAGCCGCCGGAGGCTCCAAAGGACTACATCCATGTTAGAGCCAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCTGAAAGAGTCCGAAGAGAGAAAATCAGTGAGAGAATGAAGTTCCTTCAAGATCTTGTACCGGGCTGCAATAAGGTGACTGGGAAAGCAGTTATGCTGGACGAAATTATAAACTATGTGCAATCCTTGCAGCGTCAGGTTGAGTTTCTCTCTATGAAGTTGGCAACTGTGAATCCAAGGATGGATTTCAACATGGAAGCTCTTCTGTCCAAGGAAATCTTTCAATCGCGGGGATCATTGCCACAAGCCATGTACCCATTGGATTCCTCAGCTCTAGCATTTCCCTACGGATACCAGCCCCAACAAGGACCATCTCTACAGAATGGGATTCCTAATGGAACAGAGACCCCCTTCTCGGTGAACCCTTTAAATTCTGCGATACGACGCACCTCAAGCATGCTGCCTTCCATTGATGGGTTTGGTGAAGCTGCCTCTCAGGTTTCTACGTTTTGGGAGGACGAACTCCATAGCGTTGTTCAGATGGGAATAGGCCAGAATCAGCCCCAGGGCTTTCCTGGTAAGAAAAACAAGAGACTACCAAGATAA 1374 48.11 MEIQSNELNCSSQAVQNCFLNPNWDNSMDQSDPFESALSSIVSSPVGSSGHGNTNNSNNTSCYNTPLNSPPKLNLSIMDHQQHQIRTNFPTNHLPTHPSLAPFPADPGFAERAARFSCFGTGNFSGLSAQFGLNDTELPYRSSTGWKLGDSREESSVSEQIPGGETSLKGQNDANGRKRKSIPRGKAKEVPSSPSAKDAKVASDKDESNAKRSKPDEGSGSEKDAAKAKAEANGSTKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKEIFQSRGSLPQAMYPLDSSALAFPYGYQPQQGPSLQNGIPNGTETPFSVNPLNSAIRRTSSMLPSIDGFGEAASQVSTFWEDELHSVVQMGIGQNQPQGFPGKKNKRLPR* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15017217 15020147 + Vvi5g920 Vvi5g920 787062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g920 457 Gene3D - 266 340 IPR036638 GO:0046983
Vvi5g920 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Vvi5g920 457 MobiDBLite consensus disorder prediction 149 171 - -
Vvi5g920 457 MobiDBLite consensus disorder prediction 199 230 - -
Vvi5g920 457 SMART finulus 275 325 IPR011598 GO:0046983
Vvi5g920 457 CDD bHLH_AtBPE_like 259 344 - -
Vvi5g920 457 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 143 IPR024097 GO:0006355
Vvi5g920 457 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 447 IPR024097 GO:0006355
Vvi5g920 457 MobiDBLite consensus disorder prediction 30 68 - -
Vvi5g920 457 Pfam Helix-loop-helix DNA-binding domain 273 320 IPR011598 GO:0046983
Vvi5g920 457 MobiDBLite consensus disorder prediction 236 250 - -
Vvi5g920 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 339 IPR036638 GO:0046983
Vvi5g920 457 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 56 143 - -
Vvi5g920 457 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 147 447 - -
Vvi5g920 457 MobiDBLite consensus disorder prediction 144 258 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14884 PF00010 HLH 6.20E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g920 - - vvi:100259005 806.208