Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g922 ATGGAAACCAGTGACCATCCTTCTTCTTCATCTCCATCTCCATCCATCTTCTCCGTGCCAGAATGGGATTGGGACCAACCAATGACACAACAACAACTCGAAGAACTGGACGCCATTGAATCTGCATTTCGCTCTCAAACTTCCTCCTCAACCCCAACTTCCCAAGAGGCCGACGATCGCCGGAAAATCCGCCGTCGCTTGCCCAATTCTATTGGCTCTAACCGATGTCCCAGCGCGTTCAAGGGCAGAGATTTAAATTCGTTTTCTCTGTCTCCTTGCCCCACAAACCGATTCTTGAATCTGTTTCATTCTCCTTGTCAAGAAAACTTTAAGATGAGATTGCCAAAAATAAATTTTGGAGGCCACATTGTATATTCCAGAACTGTTACTGAAGTAGAGAAAGCAACAGCGGAGCTTTTAAAGATTGTTGAAACTAAGAAGAAGGAATTGGGGCAAGCCATTCTTGGATTTGACATTGAGTGGAGACCCACCTTTAGAAAAGGTGTGTCACAAGGGAAGGCGGCAGATCCTACATCCATAAAGGTTGGAGTTGGCATTGCCAATGATGCTGTTAAGGTTTTCAAAGATCATAGTGTATCTGTTAAAGATTTGGAAGATCTATCCTATCTTGCTAATCAAAAGCTTGGTGGAGATGCAAAGAAGTGGGGTCTTGGATCTCTAACGGAAATGCTTATTTCCAAACAGCTTCTTAAGCCCAACAAAATAAGATTGGGAAACTGGGAGGCTGATGTTTTATCAAAGGCCCAACTAGAGTATGCTGCTACAGATGCTTTTGCCTCATGGTACCTATATGAGGTACTAAAGAGCTTCCCAGATACAGCCGAAAACAAAATTGAGGAACTGGAAGGAAAAGGCCTCAACCCCACTATTGTCATCACACCATAG 906 43.71 METSDHPSSSSPSPSIFSVPEWDWDQPMTQQQLEELDAIESAFRSQTSSSTPTSQEADDRRKIRRRLPNSIGSNRCPSAFKGRDLNSFSLSPCPTNRFLNLFHSPCQENFKMRLPKINFGGHIVYSRTVTEVEKATAELLKIVETKKKELGQAILGFDIEWRPTFRKGVSQGKAADPTSIKVGVGIANDAVKVFKDHSVSVKDLEDLSYLANQKLGGDAKKWGLGSLTEMLISKQLLKPNKIRLGNWEADVLSKAQLEYAATDAFASWYLYEVLKSFPDTAENKIEELEGKGLNPTIVITP* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15069724 15086324 - Vvi5g922 Vvi5g922 787064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g922 301 SUPERFAMILY Ribonuclease H-like 151 275 IPR012337 -
Vvi5g922 301 SMART 35exoneu6 123 279 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi5g922 301 Gene3D - 103 174 IPR036397 GO:0003676
Vvi5g922 301 PANTHER 3-5 EXONUCLEASE 176 282 - -
Vvi5g922 301 PANTHER 3-5 EXONUCLEASE 77 175 - -
Vvi5g922 301 CDD WRN_exo 127 275 - -
Vvi5g922 301 Pfam 3'-5' exonuclease 175 275 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi5g922 301 Gene3D - 175 276 IPR036397 GO:0003676
Vvi5g922 301 MobiDBLite consensus disorder prediction 1 17 - -
Vvi5g922 301 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED 77 175 - -
Vvi5g922 301 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED 176 282 - -
Vvi5g922 301 MobiDBLite consensus disorder prediction 42 78 - -
Vvi5g922 301 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g922 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-] - vvi:100264183 554.288
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g922 . . . . . . . . . . . . Car06g01051 . Sed02g1532 Cpe08g00414 . Bhi01g00195 Tan10g0489 Cmetu04g0875 . Hepe05g1779 . Lcy11g1794 . . . . . . . . . Cone7ag0412 . Lsi05g01862 . . Cme06g00364 . . Bda11g00322 . . Bpe13g00871 . . . Cmo06g01236 . . . . . . . . . . . . . . Cla05g00328 Cam05g0358 Cec05g0361 Cco05g0364 Clacu05g0354 Cmu05g0339 Cre05g0402 . Csa03g01074 Chy06g00344 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010236 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 32