Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g925 ATGGCATTTTGCAATAGATTTGGGAACCTCTTGAGACAGAGTATTTCTCAGAACAGTGCATCAAAGGGGCAGGGATCCATGGGAGCATTGCTTAATTCTATTCGTTGCATGTCATCTGCAAAGCTCTTTATTGGAGGTCTTTCATATGGAACGGATGATCAGTCTTTAAAGGATGCATTTTCAAGCTTTGGTGATGTGGTTGAAGCAAGGGTTATTACTGATAGAGACACTGGGAGGTCTAGGGGATTTGGGTTTGTGAACTTCACCAGCGACGATTCTGCCAGTTCTGCACTGTCTGCTATGGATGGCCAGGAGCTAAATGGTCGGAATATTCGTGTTAGTTATGCTAATGAAAGAACTCCAGGCCCTCGCAGTGGTGGTTCTGGAGGCGGTTTTGGTGGTGGTTATCGTGGGAATGGAGGTTATGGTGGTGGAGCTGGAGGGAATGATGGGTTCTAA 459 46.19 MAFCNRFGNLLRQSISQNSASKGQGSMGALLNSIRCMSSAKLFIGGLSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNFTSDDSASSALSAMDGQELNGRNIRVSYANERTPGPRSGGSGGGFGGGYRGNGGYGGGAGGNDGF* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15132754 15137711 - Vvi5g925 Vvi5g925 787067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g925 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vvi5g925 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vvi5g925 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 147 - -
Vvi5g925 152 SUPERFAMILY RNA-binding domain, RBD 34 148 IPR035979 GO:0003676
Vvi5g925 152 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vvi5g925 152 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 147 - -
Vvi5g925 152 Gene3D - 12 150 IPR012677 -
Vvi5g925 152 MobiDBLite consensus disorder prediction 115 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g925 - - - vvi:100247038 231.106
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92