Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g926 ATGGAGCCAAATCCGTTCCCCCCCATTTCCTCGCGAAACCCCACCAAAACCCTACTCTCTCTCTTCCGTTTCACCAAAACCCTGGCATCTAACCACCAACTAAATGCCCAAATCCTTGTAAATGCTCTCCACCGGTCCCTTCTCTTCGGTCCCATGATCTTCGGCGCCTACATACAATTGGGGTCTCTTCATGTTGCGTCCAAAGCCTTTAATCATATCACTTTCGAGAACCTCCATTCATGGAACACCATACTCGCGAGCCACTCCAAAAACAAGTGTTTTTACGATGTTCTACAGCTTTTTAAACGAATGCTGAAAGAGGGGAAGCTAGTTGATAGTTTCAATTTAGTTTTTGCGGTCAAAGCATGTTTTGGACTGTCACTTTTTCAAGGAGCCAAGTTGTTTCATTCTTTGGCGATCAAGTTGCGATTGGAGGGAGATCCGTATGTTGCACCTGCCCTTATGAACGTTTATACTGAGTTGGGTTCTTTAGAAGAAGCACACAAAGTGTTCGAGGAAGTTCCACTGAAAAATTCAGTAATTTGGGGTGTTATGATAAAAGGACACTTGAATTTCTCAGAGGAATTTGGAGTTTTTGAGTTGTTTTCCAGAATGAGACGCTCTGGATTTGAATTAGACCCGTTCGTGGTGGAGGGCTTGATTCAAGCCTGTGGAAATGTCTATGCTGGAAAAGAAGGGAAAACATTTCATGGCTTGTGTATAAAAAAGAATTTTATTGATTCTAACTTTTTTTTGCAGACTTCTCTAGTGGATATGTATATGAAGTGTGGTTTCCTCGACTTTGCACTCAAATTATTTGAAGAAATTTCTTATAGGGATGTAGTTGTATGGAGTGCCATAATTGCTGGATTTGCAAGAAATGGGAGAGCTTTGGAATCTATTTCCATGTTCAGGCAGATGTTAGCAGACTCGGTGACTCCAAATTCAGTGACATTTGCTAGCATTGTTCTTGCTTGTTCGAGCTTGGGATCTCTGAAGCAAGGAAGGAGTGTTCATGGGTATATGATAAGAAATGGGGTTGAACTTGATGTCAAGAATTATACTTCTTTTATTGACATGTATGCCAAATGTGGTTGTATTGTAACAGCTTACAGAGTTTTCTGTCAGATACCTGAGAAGAATGTATTTTCTTGGAGTACAATGATCAACGGATTTGGCATGCATGGTCTATGCGCAGAAGCTTTGAATCTTTTTTATGAGATGAGATCAGTAAACCAATTACCAAATTCAGTGACATTTGTTTCAGTTCTGTCAGCTTGTAGTCATTCTGGTAGGATTGAAGAAGGATGGAGCCATTTTAAATCAATGAGTAGGGATTATGGAATTACCCCAGTGGAGGAGCATTACGCCTGTATGGTAGATTTATTAGGTAGGGCTGGCAAGATTGATGAAGCTTTATCTTTCATCAATAACATGCCAACTGAACCAGGTGCTAGTGCTTGGGGAGCATTGTTGGGTGCATGTCGAATCCACAGACGAGCTGAATTAGCAGAAGAAGTGGCTAAGAAGCTACTTCCTTTAGAATCTGATCAGTCAGGTGTGTATGTCATGCTTTCTAATATTTACGCTGATGTTGGAATGTGGGAAATGGTGAAGAAGACAAGGCTGAAAATGTGTGAGAAGGGGATTCACAAGATTGTTGGATTTACCTCAATTGAGATCGAGGAGAAGTTATACTTGTTTAGCTCCGAGGATAGATTTGCTTATAAAAACACCCAAATTGAGAGTCTCTGGAATTCTCTTAAAGAGCGCATGAGAGAACTTGGTTATGTGCCTGATCTCAGATTTGTGCTTCATGATGTGGACGATGAGGTGAAGCAGGAAGTTCTTTGTGGCCATAGCGAGAAACTGGCAATTGTATTTGGACTTCTAAATTCTGGAGAAGGTATGCCCATTAGAATCACAAAAAACATGAGAGTTTGTGGTGATTGTCATACAGCAAGCAAGTTCATTTCTTTGATCACAAGAAGGAAAATCATAATGAGGGATGTCAAGAGGTTTCATCATGTGCAAGATGGTGTTTGCTCATGTGGGGACTATTGGTAA 2067 40.78 MEPNPFPPISSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15149938 15152005 + Vvi5g926 Vvi5g926 787068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g926 688 Pfam E motif 499 560 IPR046848 -
Vvi5g926 688 Pfam PPR repeat family 380 428 IPR002885 -
Vvi5g926 688 Pfam PPR repeat family 279 326 IPR002885 -
Vvi5g926 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 451 IPR002885 -
Vvi5g926 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 200 344 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 140 307 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 26 189 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 281 681 - -
Vvi5g926 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi5g926 688 Pfam PPR repeat 254 277 IPR002885 -
Vvi5g926 688 Pfam PPR repeat 180 210 IPR002885 -
Vvi5g926 688 Pfam PPR repeat 456 480 IPR002885 -
Vvi5g926 688 Pfam PPR repeat 80 108 IPR002885 -
Vvi5g926 688 Pfam PPR repeat 153 174 IPR002885 -
Vvi5g926 688 Pfam DYW family of nucleic acid deaminases 596 688 IPR032867 GO:0008270
Vvi5g926 688 Gene3D Tetratricopeptide repeat domain 33 129 IPR011990 GO:0005515
Vvi5g926 688 Gene3D Tetratricopeptide repeat domain 235 339 IPR011990 GO:0005515
Vvi5g926 688 Gene3D Tetratricopeptide repeat domain 130 234 IPR011990 GO:0005515
Vvi5g926 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 140 307 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 200 344 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 281 681 - -
Vvi5g926 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 189 - -
Vvi5g926 688 Gene3D Tetratricopeptide repeat domain 397 559 IPR011990 GO:0005515
Vvi5g926 688 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Vvi5g926 688 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Vvi5g926 688 TIGRFAM PPR: pentatricopeptide repeat domain 79 110 IPR002885 -
Vvi5g926 688 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Vvi5g926 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g926 - - - vvi:100247030 1391.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g926 . . . . . . . . . . . Cma14g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000703 4 4 3 1 3 0 2 1 0 3 3 0 2 3 2 2 0 2 3 0 3 1 1 2 0 2 2 0 0 3 52