Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g930 ATGGGCAGCTATGCTTCCAACTACCTACGCTTACTGTCTTACACCAAGCTCTTGGCCTCTCACGTGAACCAGGGCCGCCACCACGATGCCCTCTCTCTCTTCCACCATATGCACGCCTCCTCCGCTCCCGCCCTCGATGCTTTCGTCTTCCCTCTCGCCCTCAAGTCCTGCGCCGCAGCCCACCGCCCCAATCTCGGCGCCGCCATTCACGCCCACGTCACTAAGTTCTCCCTCGTCTCCAACCCCTTCGTCGCCTGCGCTCTCGTTGACATGTATGGCAAGTGCGTATCTGTTTCTTCCGCGCGCCACCTGTTCGACGAAATTCCCCACCGAAATATCGTGGTTTGGAATGCTATGATTTCTATCTACACGCATTCGGGTCGTGTTGCTGATGCTTTGGGGTTGTTCGAAGTGATGGATGTTGAGCCCAATGCGTCCACTTTCAATGCTATTATTTCGGGTTTGTCAGGGTTGGAGGATGGATCATTTAAGGCGCTCTCGTTTTATAGGAGAATGGGAGAGGTCGGGTTGAAGCAGAATTTGATCACGCTTCTTGCTTTGTTACCAGCTTGTGTGGATTTAGCGGCATTGACTTTGATTAAGGAAATTCATGGTTATGCAATTAGGAATGGTATTGACCCTCATCCCCATTTAAGGAGTTGCCTGGTGGAGGCCTATGGGCGATGTGGATGTATTGTGAATTCACAATGTGTGTTTCAGAGTATTAGTATGAGTGAAAGAGATGTGGTTGCATGGAGCAGCTTAATATCAGCTTATGCTCTACATGGGGATGCAAGAACTGCGCTGGAAACTTTTGAACAAATGGAAATGGCCAAAGTTCAGCCTGATGGGATCACTTTTCTTGGGGTTTTGAAGGCTTGTAGCCACGCTGGGTTAGCTGATGAGGCATTGGGGTACTTTGGGCGGATGTGTAAAGATTATGGCGTGGAAGCAAGTAGTGATCACTATTCGTGTGTGGTGGATGCTTTGAGTAGAGCAGGGAGGCTGTATGAAGCGTATGAGATCATACAGGGAATGCCTGTGAAGTCTACTGCAAAAACCTGGGGGGCCCTTCTCGGGGCATGTCGGACATATGGAGAAGTGGAGCTTGCAGAGATTGCTGGGAGAGCTTTGTTTGAGTTAGAGCCTGACAATGCTGCCAATTATGTGCTGTTGGCTAGAATATATGCTAGTGTGGGCAGACATGAAGAGGCACAGAGAATGAGAAGGGAAATGAATGAGATGGGAGTGAAGGCAGCGCCTGGCAGTAGTTGGGTAGTGTATCAAGTCTGA 1293 49.88 MGSYASNYLRLLSYTKLLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALSFYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKSTAKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWVVYQV* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15291832 15293125 - Vvi5g930 Vvi5g930 787072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g930 430 Gene3D Tetratricopeptide repeat domain 163 426 IPR011990 GO:0005515
Vvi5g930 430 Gene3D Tetratricopeptide repeat domain 12 162 IPR011990 GO:0005515
Vvi5g930 430 PANTHER OS03G0852000 PROTEIN 7 428 - -
Vvi5g930 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vvi5g930 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 142 IPR002885 -
Vvi5g930 430 Pfam PPR repeat family 247 295 IPR002885 -
Vvi5g930 430 Pfam PPR repeat family 111 155 IPR002885 -
Vvi5g930 430 Pfam PPR repeat 322 347 IPR002885 -
Vvi5g930 430 Pfam PPR repeat 13 38 IPR002885 -
Vvi5g930 430 Pfam E motif 365 426 IPR046848 -
Vvi5g930 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vvi5g930 430 SUPERFAMILY TPR-like 249 409 IPR011990 GO:0005515
Vvi5g930 430 PANTHER OS07G0578800 PROTEIN-RELATED 7 428 IPR045215 GO:0003723|GO:0009451
Vvi5g930 430 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Vvi5g930 430 TIGRFAM PPR: pentatricopeptide repeat domain 13 40 IPR002885 -
Vvi5g930 430 TIGRFAM PPR: pentatricopeptide repeat domain 114 139 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g930 - - - vvi:100248660 862.062
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013048 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 3 1 1 1 1 0 1 1 0 1 1 1 1 28