Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g933 ATGCTGATGAAGGTATGCGAACAATGCAAAGTAAAGATCAGGGTCAGCTTACTATCTGCTCCTGGTTCATATCCTACTGGTCGTCCTTTAGAGGGTGCTGATTCTCGGACCATCTTTGTTAACAATGTTCATTTTACTGCAACCAAGGTTAGTCTTTCTCGGCATTTTAATGAGTTTGGGGAAGTGGCTGCAAGACATGCTCTTTCTCTTGATGGCACCTCCTTTATGTCACGTATTCTCAAGGTTGTGAAGAGAAACTCTACTCGTCAAGAAGCTGCTCCATGTAATATTCTGGGATTTCTTCTTATCTGA 312 42.31 MLMKVCEQCKVKIRVSLLSAPGSYPTGRPLEGADSRTIFVNNVHFTATKVSLSRHFNEFGEVAARHALSLDGTSFMSRILKVVKRNSTRQEAAPCNILGFLLI* 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15339881 15340519 + Vvi5g933 Vvi5g933 787075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g933 103 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 63 94 IPR040366 GO:0008143|GO:0043488|GO:1900364
Vvi5g933 103 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 18 62 IPR040366 GO:0008143|GO:0043488|GO:1900364
Vvi5g933 103 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 63 94 - -
Vvi5g933 103 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 18 62 - -
Vvi5g933 103 Gene3D - 31 90 IPR012677 -
Vvi5g933 103 SUPERFAMILY RNA-binding domain, RBD 29 86 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g933 - - - vvi:100855398 120.938
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .