Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g946 ATGCCTACACACCTCCAGTTCAAGCCCCTCCCTTTCAAAAAGAGTAAGCCTGAACTGGAGGAAACCAGGGGGCCAGTTGCATCTCGGCTAAAGTACGAGCTCCACTTGAGCCGGGAAGATGGGGAGCTAAGGAGACCAACTGATTCTCCATCACGCCATGAGATTGTAGGCCATAGAGCTGCTGCTGACTTGAACTATCAACGCAATGGTGGTGTAAATTCGGGTGATAAGAGGTCTATGCGCCAAAGCACAGGGTCTGATCACAGCATTGACCACTCACCACTACACCCACGTTACCAGGCAATGGTTGGAGGCAAAAGCAGTGGAGTATCTTCTCCCTCATGGCAAAAAAGGCTTTCTTCTGAAGTTAGCCACAGCCTAGGTCCCTCCACTCAAAGGTCCCAACTGAGACCAGCTACTCAAGGCAATCGAAAGCCTGATGACAGCACTGCTGTTCCGAAATTTGGTGATTGGGATGAGAGAAACCCTTCATCAGCTGAAGGGTATACACACATTTTCAACAAAGTTCATGAGGAGAAGCAGAGGGTAGAAGGAACAGTACCAGCCATGGTGACTGAGCCTTCTTATCCCAGTGGTCCGGAGCAATATGGAAAAGACCATGCCAAGAGATGTTGCTGCTTCCCATGGGGTCGAAAATGA 660 49.85 MPTHLQFKPLPFKKSKPELEETRGPVASRLKYELHLSREDGELRRPTDSPSRHEIVGHRAAADLNYQRNGGVNSGDKRSMRQSTGSDHSIDHSPLHPRYQAMVGGKSSGVSSPSWQKRLSSEVSHSLGPSTQRSQLRPATQGNRKPDDSTAVPKFGDWDERNPSSAEGYTHIFNKVHEEKQRVEGTVPAMVTEPSYPSGPEQYGKDHAKRCCCFPWGRK* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15844801 15849126 - Vvi5g946 Vvi5g946 787088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g946 219 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 35 216 - -
Vvi5g946 219 MobiDBLite consensus disorder prediction 67 90 - -
Vvi5g946 219 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 146 181 IPR008700 -
Vvi5g946 219 MobiDBLite consensus disorder prediction 1 166 - -
Vvi5g946 219 MobiDBLite consensus disorder prediction 11 59 - -
Vvi5g946 219 MobiDBLite consensus disorder prediction 105 147 - -
Vvi5g946 219 MobiDBLite consensus disorder prediction 184 206 - -
Vvi5g946 219 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 35 216 IPR040387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g946 K13456 RIN4; RPM1-interacting protein 4 - vvi:100255563 426.017
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49