Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g963 ATGAAAGTCATGCTAAATATGGAAAAATGCACATTTGCTGGGAAATACTGCAATGCTTTTGTCTTTTGGATTTGTTTTATGAAAGTTTTAATGGATTTTTGTGGGTATTATATTTGGTTTCACATTAATGCAAATCTCTTGGGAATTACAGCAGGAGAGCAGTTAAAGCAAAGGAACGTTATAGAGCTTGTAGATGAATCTCCGGCTCCTTTGCTTGGTTCTACAAAGAACACAATTGAGCTCAAGAAACAAGATGCATTCGAAGTTCCAAGATGCATTGACACCCGTATGGATGGAGTTTTTCCTGCTAAAAAGTCTAGGTTTAGGATGCTTTCTGGAAAAGAAAATGCTAAGGAAGATATTTCAGCTGCGCCAGCTGGCTGCTTGAAGAATATCTGTGTTTCTTTGAATTCAGTTGTCAAGAGTCATCCACAACTTTCATGTCCAGAGAATACTGTGGCTTCAGCTGCAGTTTCCAAAGATGGTACAAGGCAAGATTGTGAATATGCTGAAAAGTGCAGTCAAAGCACATTTCGTAGTGTGGCTGAATTATCACTTGGTAGTGAGAGGATATCTGAAATGGCTGTTGTTGATATGGATAAAGCATTAAAAGGGCTGGTTGCCTGTGAACCCCGTGCTTTTTCTGGTTTAGCTGCTGATTCTTCTGAAAAGTTCGACAATTTTACTTCAATCTCTTCTGGCCATTTCTGCTCTGAATTTCATATTCCTGGGCAGAAGGCCCCACTGGATTTTACATTAAAAACTAATATGCAGATAGTGTCTTCTTCCTCTGTGAACTGGTTTCATATATTGAACATGTCTGCTACTTACAATGGTACAACTACACCGCAATTTGGTTGTTCCAAGGATCAAAATATTAGCTGCTCCTCTGGGATCACTTCCACTGCCCAAATATTCAATTATAGAGCTTTGCACTCATGGGTGCACCCTCAGTCTTCTCTACCACCTTCTGTCATATCAGCATGGAACTTATCTGCTACAGATGGAGTGGAAACGGATTTCTTAATCAAACGACAACTAGCATGGGAAGACTCATTTCGAAGTCTCTATTACATGCTTAGAAAGAATATTTGTAATATCTTCTATGTTTGTACTTCACAATTTGTGGTGGTGTTTGCTAGTGGTGATGGCTCAGGAGGAAAGAAACAGTTCTCTAATGCTTATATCTCCCAGTCAACAAGAGGCTTAAGGTCACTGTTGAGAGAGCATGATGTTTGTTTCTCTATGCCTCTTTGTCGTTCTAAAGTAGAATAA 1275 39.29 MKVMLNMEKCTFAGKYCNAFVFWICFMKVLMDFCGYYIWFHINANLLGITAGEQLKQRNVIELVDESPAPLLGSTKNTIELKKQDAFEVPRCIDTRMDGVFPAKKSRFRMLSGKENAKEDISAAPAGCLKNICVSLNSVVKSHPQLSCPENTVASAAVSKDGTRQDCEYAEKCSQSTFRSVAELSLGSERISEMAVVDMDKALKGLVACEPRAFSGLAADSSEKFDNFTSISSGHFCSEFHIPGQKAPLDFTLKTNMQIVSSSSVNWFHILNMSATYNGTTTPQFGCSKDQNISCSSGITSTAQIFNYRALHSWVHPQSSLPPSVISAWNLSATDGVETDFLIKRQLAWEDSFRSLYYMLRKNICNIFYVCTSQFVVVFASGDGSGGKKQFSNAYISQSTRGLRSLLREHDVCFSMPLCRSKVE* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16199275 16222697 + Vvi5g963 Vvi5g963 787105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g963 424 PANTHER DOWNSTREAM NEIGHBOR OF SON 52 424 IPR024861 -
Vvi5g963 424 PANTHER PROTEIN DOWNSTREAM NEIGHBOR OF SON 52 424 - -
Vvi5g963 424 PRINTS Downstream neighbour of Son (DONSON) protein signature 247 259 IPR024861 -
Vvi5g963 424 PRINTS Downstream neighbour of Son (DONSON) protein signature 352 365 IPR024861 -
Vvi5g963 424 PRINTS Downstream neighbour of Son (DONSON) protein signature 365 380 IPR024861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g963 K22422 DONSON; protein downstream neighbor of Son - vvi:100257121 659.062
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .