Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g968 ATGAAAGGGAAGGTGCGAAGTTGGAGGAGTGCATTGACAGAAGCAGCCAATATAGGTGGAGAGCATGTGGAGAAGAATGGGTATGAGTCCGGGCATGTTAATGAAATCGTCAAGGATATATTCAGGAGATTGAATTGTAGAATGTTGGATGTTGATGACAACTTGGTTGGTATGGATTCTCATGTAAATGAGATAATTCGGCGCCTATGTGTTGATCAATTGAATGATGTTCGTATCATTGGTATATGTGGAATAGGTGGAATGGGTAAAACGACTATCGCCAAAGTTGTATATAATAGATTTTCTCATGAATTTGAGTATATGAGCTTTCTCGAAAATGTTAGAGAAGTTGGCAATACTATGGGTTCGCATCATTTACAAAATCAATTTCTTTGTGATCTACTACAAGTGGAGAGAAATCAAAATGTAAGCAATGTTGGCCAAGGAGCCAATACGATAAAAAATGTTCTCCGATGTAAAAGAGTTTTTATTGTTCTTGATGACATTGATCATTCAAATCAATTAGAATATTTACTCAGAAATCGTGATTGGCTTGGAAGAGGAAGCAGAGTCATCATAACAACAAGAAATAAACATTTGTTACAAGAAACGGATGACGTATATGAGGTTGAGGAATTAAATTCTAAACAAGCTCGTGAGCTTTTTAGTCTCTTTGCTTTTAGACAAAATCTTCCTAAACAAGACTTCATCGACCTCTCGGATCGTGTAGTCAATTATTGTCATGGCCTTCCTTTAGCTCTAAAAGTCTTGGGTTCTTTTTTGTTTAACAAGGCAATACCCCAATGGGAAAGTGAATTGTCTAAATTGGAAAGAGAACTTGAAGTGGGAATTTCTGATGTGCTTAAAGTAAGCTATGACGGATTAGATTATACACAGCAGGAAATATTTCTTGATATTGCATGTTGTTTTAAAGGGAAAGACAAAGACTTTGTTTCAAGAATATTGGACGGTTGTAATTTTTATGCAGAGAGAGGAATAAGAGCCCTCTGTGATAAGTGTCTTATATCTCTTTCTGAAAATAAGATACTTATGCATGATTTGATACAACAAATGGGATGGAACATTATTCGTAGTGAATATCTTGGTGATCCTACAAAATGGAGGAGATTGTGGGATCCGAGTGATATCTGTCGTGCATTTAGAATGGGGGGGATGAAAAATGTTGAGGCAATATTCTTGGACTTGTCTAGATCGACACCACTAGAAGTTAGTACAAAGATTTTTGCAAAGATGAAAAAACTTAGATTGCTCAAGATTTATTCGAGCGGTTATTATGGTACCATGGAAAAGCAGTTGAAAGTTATTCTTCCTGAAGATTTTCAATTCCCTGCACATGAGTTGAGATATCTTCATTGGGAAGGATACCCTTTCAAATCATTGCCGTCAAATTTTCTTGGAGTGAACCTTATTGAACTCAACATGAAGGATAGCAACATAAAACAACTTATGCAAAGAAATGAGCGTTTGGAGCAGTTGAAGTTCTTAAATTTATCTGGATCAAGGCAACTCACTGAAACATCGTTCTCAAATATGCCAAATCTAGAGACGTTAATACTTGCAGATTGTACGAGTTTGAATGTTGTTGATCCATCTATTGGAGATCTCAAGAAGCTTACCGTGTTGAATTTGCTGGGGTGCGAAAACCTTACGAGTTTACCAAGTAGCATTCAATACTTGGACTCTCTTGAAGCTATGAACTTGATGACTTGCTCAAACTTGGAGGAATTTCCAGAGATGAAGGGAAGTCCTATGAAAGCTTTATCTGATCTTCTCCTTGATGGATGTGGTATTAAGGAATTACCCTCCTCAATAGAACTTCTCACTAGACTTAAGAGGTTATATTTGTCAAAGTGCAAAAACTTGAGGAGCCTTCCAAGTAGCATTTGCAGGTTAAAGTCCCTTGTTCAGCTCGATCTCCATGGTTGTTCAAATCTAGATACTTTTCCAGAAATCATGGAGGATATGAAATGCTTAGAATCTCTTGATATAAGAAGTTCAGGTATAAAAGAATTACCATCATCAATTCAAAATCTGAAAAGCCTCTTGCGTTTGGATATGAGCAATTGCCTTGTGACTCTTCCAGACAGCATTTATAATTTGAGATCTGTGACACTACGAGGTTGTTCAAACTTGGAGAAGTTTCCCAAGAATCCGGAAGGCTTCTACTCCATAGTACAACTAGATTTCAGTCACTGCAATCTAATGGAAGGGTCAATACCCACTGAAATCTGGGACCTAAATTCCTTGGAAATATTAAATCTAAGTTGGAACCATATGGTTAGCATACCTTCTGGCATCTCTCAACTTTGTAAGCTTGATTTCCTTGATATCAGTCACTGCGAGATGCTCCAAGACATTCCAGAGCTTCCATCGAGTCTGCGAAAAATAGATGCCCTCTATTGCACGAAGCTGGAAATGTTATCAAGTCCATCATCTCTACTCTGGTCTTCCCTCCTCAAATGGTTCAATCCAACAAGTAATGAGCACTTGAATTGCAAGGAAGGCAAGATGATTATTATCCTAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGAGATTGGAAGCCAAGTAAGAATAGAACCTCCTCTGAATTGGTACGAGGATGACCACTTTCTGGGATTTGCTTTCTTCACTCTTTATCGTGACTACGCTCATTGTACGATTCCATCTCGATTTAGTCTGAGATTGCGCGGTGATCCGGATGAAGTTGTGGGTGACTGCAATGACCACAATGACAGCCGCATTTGGAATTGGTGTGAATGCAACCGCTGTTATGATGACGCATCAGATGGATTGTGGGTGACTCTCTATCCTAAGAATGCTATTCCAAATAAGTACCACCGCAAACAACCATGGCACTTTCTGGCTGCGGTTGATGCGACCAATATCAAGAGGTGCGGGGTTCAGCTGATATACACCCATGATTATCTACACCACAATGTGCCTATGTTGGCGGATCATCAAAAAGGCCATGATGATGCTGGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAGCACTGATCTCAAGCTTTAA 3084 38.98 MKGKVRSWRSALTEAANIGGEHVEKNGYESGHVNEIVKDIFRRLNCRMLDVDDNLVGMDSHVNEIIRRLCVDQLNDVRIIGICGIGGMGKTTIAKVVYNRFSHEFEYMSFLENVREVGNTMGSHHLQNQFLCDLLQVERNQNVSNVGQGANTIKNVLRCKRVFIVLDDIDHSNQLEYLLRNRDWLGRGSRVIITTRNKHLLQETDDVYEVEELNSKQARELFSLFAFRQNLPKQDFIDLSDRVVNYCHGLPLALKVLGSFLFNKAIPQWESELSKLERELEVGISDVLKVSYDGLDYTQQEIFLDIACCFKGKDKDFVSRILDGCNFYAERGIRALCDKCLISLSENKILMHDLIQQMGWNIIRSEYLGDPTKWRRLWDPSDICRAFRMGGMKNVEAIFLDLSRSTPLEVSTKIFAKMKKLRLLKIYSSGYYGTMEKQLKVILPEDFQFPAHELRYLHWEGYPFKSLPSNFLGVNLIELNMKDSNIKQLMQRNERLEQLKFLNLSGSRQLTETSFSNMPNLETLILADCTSLNVVDPSIGDLKKLTVLNLLGCENLTSLPSSIQYLDSLEAMNLMTCSNLEEFPEMKGSPMKALSDLLLDGCGIKELPSSIELLTRLKRLYLSKCKNLRSLPSSICRLKSLVQLDLHGCSNLDTFPEIMEDMKCLESLDIRSSGIKELPSSIQNLKSLLRLDMSNCLVTLPDSIYNLRSVTLRGCSNLEKFPKNPEGFYSIVQLDFSHCNLMEGSIPTEIWDLNSLEILNLSWNHMVSIPSGISQLCKLDFLDISHCEMLQDIPELPSSLRKIDALYCTKLEMLSSPSSLLWSSLLKWFNPTSNEHLNCKEGKMIIILGNGGIPGWVLHQEIGSQVRIEPPLNWYEDDHFLGFAFFTLYRDYAHCTIPSRFSLRLRGDPDEVVGDCNDHNDSRIWNWCECNRCYDDASDGLWVTLYPKNAIPNKYHRKQPWHFLAAVDATNIKRCGVQLIYTHDYLHHNVPMLADHQKGHDDAGENQADDQEPHPKRLRASSTDLKL* 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16266731 16270755 - Vvi5g968 Vvi5g968 787110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g968 1027 MobiDBLite consensus disorder prediction 995 1027 - -
Vvi5g968 1027 Gene3D - 1 43 IPR035897 -
Vvi5g968 1027 Gene3D Ribonuclease Inhibitor 589 844 IPR032675 -
Vvi5g968 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 306 IPR027417 -
Vvi5g968 1027 PANTHER TMV RESISTANCE PROTEIN N-LIKE 594 812 - -
Vvi5g968 1027 PANTHER TMV RESISTANCE PROTEIN N-LIKE 22 585 - -
Vvi5g968 1027 PRINTS Disease resistance protein signature 79 94 - -
Vvi5g968 1027 PRINTS Disease resistance protein signature 156 170 - -
Vvi5g968 1027 PRINTS Disease resistance protein signature 247 261 - -
Vvi5g968 1027 PRINTS Disease resistance protein signature 636 652 - -
Vvi5g968 1027 Pfam NB-ARC domain 59 286 IPR002182 GO:0043531
Vvi5g968 1027 Pfam C-JID domain 852 984 IPR045344 -
Vvi5g968 1027 SUPERFAMILY L domain-like 352 698 - -
Vvi5g968 1027 Gene3D - 44 210 IPR027417 -
Vvi5g968 1027 SMART LRR_typ_2 591 613 IPR003591 -
Vvi5g968 1027 SMART LRR_typ_2 614 638 IPR003591 -
Vvi5g968 1027 SMART LRR_typ_2 753 776 IPR003591 -
Vvi5g968 1027 SMART LRR_typ_2 685 707 IPR003591 -
Vvi5g968 1027 SMART LRR_typ_2 662 684 IPR003591 -
Vvi5g968 1027 ProSiteProfiles Leucine-rich repeat profile. 755 776 IPR001611 GO:0005515
Vvi5g968 1027 SUPERFAMILY L domain-like 627 838 - -
Vvi5g968 1027 Gene3D - 212 296 IPR042197 -
Vvi5g968 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 594 812 IPR044974 GO:0006952
Vvi5g968 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 585 IPR044974 GO:0006952
Vvi5g968 1027 Coils Coil 479 499 - -
Vvi5g968 1027 Gene3D Ribonuclease Inhibitor 387 586 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g968 - - - vvi:104879366 2074.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10