Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g969 ATGGGTTTGCATCATTTACAAAATCAACTTCTTTGTGATTTACTAGAGGTGGAGAGAAATCAAAACATAAGCAATGTTGGGCAAGGAGCCAATATGATAAAAAATGTTCTCCGATTTAAAAGAGTTTTTATTGTTCTCGATGACATTGATGATTCAGATCAATTAGAATATTTACTCAGAAATCGTGATTGGCTTGGAAAAGGAAGCAGAGTCATCATTACAACTAGAAGTAAACAGTTGTTGCAAGAAATGGATGACGTATATGAGGTTGAGGAATTAAATTTTGAACAAGCTCGTGAGCTTTTTAGTCTCTATGCTTTTAAACAAAATCTTCCTAAACAAGACTTCATCCACCTCTCGGATCGCGTAGTCTACTATTGTCATGGTCTTCCATTAGCTCTAAAAGTCCTCGGTTCTCTCTTGTTTAACAAGACAATAATCCAATGGGAAAGTGAATTGTGTAAATTAGAAAGGGAACCTGAAGTGAAAATACAAAATGTGCTTAAAATAAGCTTTGACGGATTAGATCATACACAGAAGAAAATATTTCTTGATATTGCATGTTTTTTTAAAGAAGAAGACAAAGATTTTGTTTTAAGGATATTGGATAGTTGTGATTTATATGTAGAGATAGGAATAAAAGTCCTCTGTGATAAGTGTCTTATATCTCTTTCCAAAAACAAGATACTTATGCATGATTTGATACAAGAAATGGGATGGAACATTATTCGTAGTGAATTTCCCGATGATCCTGGAAAATGGAGCAGATTGTGGGATCCGAGTGATGTGTATCGTGCATTTACAATGAAAAAGGTAACCGTCAAACTCGTGAACTTATTTAAGCTTCATAAAAATATCATTCAATACTTGGACTCTCTTGAAACTATTTACTTGAATAATTGCTCAAACTTGGAGGAATTTCCGGAGATGAAGAGAAGTTCTATGAAAGCTTTATCTTATCTTCACTTTGATGGATCTGCTATTAAGGAATTACCCTCCTCAATAGAACATCTCACTGGACTTAAGGAGTTATATATGAAAGTGTGCAAAAACTTGAGGAGTCTTCCAAGTAGCATTTGCAGGTTAAAGTCCCTTAGAAACCTCCAAGTCTTTGGTTGTTCAAATCTAGATACTTTTCCAGAAATCATGGAGGATATGAAATACTTAGAATTTCTTGATTTAAGAGGAACAGGTATAAAAGAGCTACCATCATCAATGGAACATCTTCATAATATTGGTGAATTTCACTGCAAGATGCTCCAAGAAATTCCAGAGCTTCCATCAAGTCTACCAGAAATACATGCCCACGATACGAAGCTGGAAATGTTATCAGGTCCATCATCTCTACTCTGGTCTTCCCTCCTCAAATGGTTCAAACCAACAAGTAATGAGCACTTGAATTGCAAGAAAGGCAAGATGATTATCAATCCAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGACATTGGAAGCCAATTAAGAATAGAGCTTCCTTTGAATTGGTACGAGGACAACCACTTTCTGGGATTTGCTTTCTTCTCTCTTTATCATAAAGAGAATCATTTTGAGGCTTCATGTCATTTTGATCTGAGATTGCGCGGTGATCCAGATGAAGTTGTGGATGACCTCTCTATTTCTTCTTGGTGTAAATGCCACGAGTTTAATGGTGATGCATCCGATGAATTGTGGGTGACTCTCTATCCTAAGAATGCTATTCCAAATAAGTACCACCGCAAACAACCATGGCACTTTCTGGCTGCGTTTGATTTTGTTACTAGGATTAATGGTCAGGCTACTCATACCAATATCAAGAGGTGCGGGGTTCAGCTGATATACACCCATGATTATCTACACGATAATGTGCCTATGTTGGTGGATCATCAAAGAGGCCATGATGATGCCGGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAGCACTGATCTCAAGCTTTAA 1983 37.17 MGLHHLQNQLLCDLLEVERNQNISNVGQGANMIKNVLRFKRVFIVLDDIDDSDQLEYLLRNRDWLGKGSRVIITTRSKQLLQEMDDVYEVEELNFEQARELFSLYAFKQNLPKQDFIHLSDRVVYYCHGLPLALKVLGSLLFNKTIIQWESELCKLEREPEVKIQNVLKISFDGLDHTQKKIFLDIACFFKEEDKDFVLRILDSCDLYVEIGIKVLCDKCLISLSKNKILMHDLIQEMGWNIIRSEFPDDPGKWSRLWDPSDVYRAFTMKKVTVKLVNLFKLHKNIIQYLDSLETIYLNNCSNLEEFPEMKRSSMKALSYLHFDGSAIKELPSSIEHLTGLKELYMKVCKNLRSLPSSICRLKSLRNLQVFGCSNLDTFPEIMEDMKYLEFLDLRGTGIKELPSSMEHLHNIGEFHCKMLQEIPELPSSLPEIHAHDTKLEMLSGPSSLLWSSLLKWFKPTSNEHLNCKKGKMIINPGNGGIPGWVLHQDIGSQLRIELPLNWYEDNHFLGFAFFSLYHKENHFEASCHFDLRLRGDPDEVVDDLSISSWCKCHEFNGDASDELWVTLYPKNAIPNKYHRKQPWHFLAAFDFVTRINGQATHTNIKRCGVQLIYTHDYLHDNVPMLVDHQRGHDDAGENQADDQEPHPKRLRASSTDLKL* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16286359 16290283 - Vvi5g969 Vvi5g969 787111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g969 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 329 419 IPR044974 GO:0006952
Vvi5g969 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 267 IPR044974 GO:0006952
Vvi5g969 660 Pfam NB-ARC domain 4 164 IPR002182 GO:0043531
Vvi5g969 660 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 267 - -
Vvi5g969 660 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 329 419 - -
Vvi5g969 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 186 IPR027417 -
Vvi5g969 660 Pfam C-JID domain 481 617 IPR045344 -
Vvi5g969 660 Gene3D - 2 91 IPR027417 -
Vvi5g969 660 MobiDBLite consensus disorder prediction 628 660 - -
Vvi5g969 660 Gene3D - 92 176 IPR042197 -
Vvi5g969 660 SUPERFAMILY L domain-like 231 444 - -
Vvi5g969 660 Gene3D Ribonuclease Inhibitor 268 442 IPR032675 -
Vvi5g969 660 PRINTS Disease resistance protein signature 36 50 - -
Vvi5g969 660 PRINTS Disease resistance protein signature 127 141 - -
Vvi5g969 660 PRINTS Disease resistance protein signature 288 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g969 - - - vvi:100854464 583.948
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10