Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g977 ATGAGCCCGTCTCTTGGGTATGTCAATTTTACATCTCTCACATTCCTCAGTCTTGCTTGGAATCATTTCAATCATGAGATACCCAATTGGCTATTTAATCTCAGCACTAGTCATATACCTCTAAATGATTTAGATTTATCATACAATCAGTTGACAGGGCAAATACCAGGGTATTTAGGAAACTTATCATCCTTGAAGTATTTATTACTTTATGGAAATAGGTTAAATGGAACTCTTCCAAGCAGTCTATGGCTTCTTTCAAATTTGGTGTATTTAGATATTGGAAATAACTCCTTAGCAGACACAATATCAGAAGTTCATTTTAATAAACTCTCAAAATTGAAGTACTTAGACATGTCCTCAACATCTATTATTTTCAAAGTCAAGTCCAATTGGGTTCCTCCTTTTCAACTTGAAGAAATGTGGATGAGTTCCTGCCAGATGGGCCCCAATTTTCCCACGTGGCTAGAAACTCAAACATCTCTTCGGTATCTAGACATTTCCAAGTCTGGAATTGTGGACATAGCTCCAAAATGGTTCTGGAAGTGGGCTTCACATATTGATAGACGACTGATCGACCTCTCAGATAACCAGATATCTGGGAATTTATCTGGAGTTCTGCTAAATAATACTTACATTGATTTAAGCTCTAATTGCTTCATGGGTGAGTTACCACGATTGTCTCCACAAGTTTCTTTATTGAACATGGCTAACAACTCATTTTCGGGGCCAATTTCCCCTTTCTTGTGCCAAAAATTGAATGGAAAAAGTAATCTCGAGATATTGGACATGTCAACAAACAATTTATCAGGGGAGCTTTCTCATTGTTGGACGTATTGGCAATCTCTGACTCGTTTGAACTTAGGAAACAATAATCTTTCAGGTAAAATTCCTGACTCCATGGGCTCTTTGTTTGAACTTGAAGCATTGCACTTGCATAATAATAGGTTATCTGGAGATATACCACCTTCACTGCGAAACTGCAAATCTTTGGGGCTCTTGGATTTAGGTGGTAACAAACTTTCAGGAAATTTACCAAGCTGGATGGGAGAGAGGACGACTCTGACGGCTCTCAGATTAAGATCAAACAAATTAATTGGCAACATTCCTCCACAAATATGCCAACTTTCTTCCCTTATAATATTGGATGTTGCCAATAATAGCTTATCCGGAACCATACCAAAGTGTTTCAATAATTTCAGTTTAATGGCAACAATAGGCACTGAAGATGATTCTTTTTCTGTTTTAGAATTTTACTACGACTACTACTCCTACTTCAACCGCTACACTGGAGCACCAAACTATGAGAATCTTATGTTGGTCATCAAAGGGAAGGAATCAGAGTACAGGAGCATTCTAAAATTTGTTCGGAGCATAGATCTTTCAAGTAATGATTTGTGGGGATCAATCCCTACCGAAATCTCAAGTCTTTCTGGATTGGAATCTTTGAACTTATCTTGCAATAATTTGATGGGAAGCATACCGGAGAAAATGGGAAGCATGAAGGCCTTAGAATCTCTGGATCTCTCGAGAAACCATCTCTCAGGTGAAATTCCTCAAAGCATGAAGAACTTATCATTTCTTAGTCACTTGAATCTATCATACAACAATTTTTCGGGAAGAATTCCATCAAGCACACAACTTCAAAGCTTTGATGCAATTAGCTACATTGGCAATGCCGAGCTTTGTGGAGTCCCTCTGACAAAAAATTGCACAGAAGATGAAGACTTTCAAGGTATAGACGTGATTGATGAAAATGAAGAAGGCTCTGAAATCCCATGGTTCTACATTGGCATGGGACTTGGGTTCATTGTAGGCTTTTGGGGAGTCTGCGGTGCTCTTTTATTCAAGAAAGCTTGGAGGCATGCTTATTTCCAATTTCTTTACCGTGTTAAAGACTGGGTGTATGTGGCCATAGCGATAAGGTTGAACCGACTCCAAAATAATTTGAGGGTGCCCTAG 1962 38.63 MSPSLGYVNFTSLTFLSLAWNHFNHEIPNWLFNLSTSHIPLNDLDLSYNQLTGQIPGYLGNLSSLKYLLLYGNRLNGTLPSSLWLLSNLVYLDIGNNSLADTISEVHFNKLSKLKYLDMSSTSIIFKVKSNWVPPFQLEEMWMSSCQMGPNFPTWLETQTSLRYLDISKSGIVDIAPKWFWKWASHIDRRLIDLSDNQISGNLSGVLLNNTYIDLSSNCFMGELPRLSPQVSLLNMANNSFSGPISPFLCQKLNGKSNLEILDMSTNNLSGELSHCWTYWQSLTRLNLGNNNLSGKIPDSMGSLFELEALHLHNNRLSGDIPPSLRNCKSLGLLDLGGNKLSGNLPSWMGERTTLTALRLRSNKLIGNIPPQICQLSSLIILDVANNSLSGTIPKCFNNFSLMATIGTEDDSFSVLEFYYDYYSYFNRYTGAPNYENLMLVIKGKESEYRSILKFVRSIDLSSNDLWGSIPTEISSLSGLESLNLSCNNLMGSIPEKMGSMKALESLDLSRNHLSGEIPQSMKNLSFLSHLNLSYNNFSGRIPSSTQLQSFDAISYIGNAELCGVPLTKNCTEDEDFQGIDVIDENEEGSEIPWFYIGMGLGFIVGFWGVCGALLFKKAWRHAYFQFLYRVKDWVYVAIAIRLNRLQNNLRVP* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16683694 16689259 + Vvi5g977 Vvi5g977 787119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g977 653 SUPERFAMILY RNI-like 354 549 - -
Vvi5g977 653 SUPERFAMILY RNI-like 8 401 - -
Vvi5g977 653 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 6 648 - -
Vvi5g977 653 Pfam Leucine Rich Repeat 282 303 IPR001611 GO:0005515
Vvi5g977 653 Pfam Leucine Rich Repeat 378 400 IPR001611 GO:0005515
Vvi5g977 653 Pfam Leucine rich repeat 41 99 IPR001611 GO:0005515
Vvi5g977 653 Pfam Leucine rich repeat 457 514 IPR001611 GO:0005515
Vvi5g977 653 Gene3D Ribonuclease Inhibitor 1 107 IPR032675 -
Vvi5g977 653 PANTHER LRR RECEPTOR-LIKE KINASE 6 648 - -
Vvi5g977 653 SMART LRR_typ_2 477 501 IPR003591 -
Vvi5g977 653 SMART LRR_typ_2 376 399 IPR003591 -
Vvi5g977 653 SMART LRR_typ_2 525 548 IPR003591 -
Vvi5g977 653 SMART LRR_typ_2 62 86 IPR003591 -
Vvi5g977 653 SMART LRR_typ_2 10 34 IPR003591 -
Vvi5g977 653 SMART LRR_typ_2 304 328 IPR003591 -
Vvi5g977 653 Gene3D Ribonuclease Inhibitor 108 574 IPR032675 -
Vvi5g977 653 PRINTS Leucine-rich repeat signature 41 54 - -
Vvi5g977 653 PRINTS Leucine-rich repeat signature 501 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g977 - - - vvi:104879362 1293.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g977 . . . . . . . . . . . . . . . . . Bhi01g01173 . . . . . Lcy11g1273 . . . . . . . . . . Cone15ag0087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6