Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g982 ATGGCTGGAGTTAGTGGTACTGGAGATGTCCAACCACATAGGTCTCATAGATCTCGTCAGTCAGGCCCATCTGCCAAGAAAAAATCAAAATCTGATAAGAGGAAGCGTGACATTTCTGACGAGAAAAAGCATAATCCTAAGGCGTTTGCTTTTAGTTCATCAGTGAAAGCCAAGCGTCTACAATCACGTGCTACAGAGAAAGAGCAGCGTAGGCTTCACATCCCAACAATTGATCGGTCGACTGGAGAACCGGCTCCATATGTTGTTGTGGTCCATGGGCCTCCTCAGGTTGGGAAATCACTTCTAATAAAGTCTCTAGTGAAACATTACACCAAGCATAATTTATCTGAGGTTCGAGGCCCAATTACCATTGTCTCAGGTAAGAATAGGCGACTACAGTTTGTGGAGTGTCCAAATGATATTAATGGAATGATTGATGCTGCAAAGTTTGCTGATTTAGCATTGCTTCTTATAGATGGGAGTTATGGCTTTGAAATGGAAACTTTTGAGTTTCTTAATATTTTGCAAGTTCATGGATTCCCCAAGGTTATGGGAGTTCTCACACACCTTGATAAATTTAAGGATGCAAAGAAACTGAAAAAGACAAAGCAACGTCTCAAGCATCGATTTTGGACTGAAATATATGATGGAGCTAAATTATTTTACTTATCAGGTCTTGTTCATGGGAAGTACCCTAAACGTGAAATTCATAATCTTGCAAGGTTCATCTCTGTTATGAAGTTTCATCCTTTGTCTTGGCGAGCTTCTCATCCCTATATTTTGGTGGATCGTTTTGAAGATGTCACACCACCAGAAAGAGTGCAACTGAATAACAAATGTGACAGGAATATCACACTTTATGGTTACTTACGAGGCTGCAATTTGAAGAAAGGAACTAAGGTGCATATTGCTGGTGTAGGTGATCACAGTTTAGCTGGTGTCACTGGGTTAGCTGATCCCTGCCCCTTACCATCAGCTGCCAAAAAGAAGGGATTGCGAGACAGGGACAAACTATTTTATGCACCTATGTCTGGTCTTGGGGATCTCCTATATGACAAGGATGCTGTCTACATAAACATAAATGACCATCTTGTACAGTTTTCTAATGTTGATGATGAAAATGGGGGAGCTGCTCGGAAAGGAAAGGATCGTGATGTAGGTGAAGTCTTGGTGAAATCACTTCAGAATACTAAATATTCAATTGATGAGAAGTTAGAAAAAAGCTTCATTTCTCTTTTTGGCAGGAAGCCAAATGTTTCATCTAAAGCCAATAATTTGAATGCTGATGGATCTGATGAAGGAACTGGTTCTGAAGATTCGGATGGTTCGGCATCATTAGAGCAAGATCATGCTGCTAAAAAGGATGCAACTTTAACAAGTAAAGAGGGTCTTGAAGAAGAAAACGGTAATGCATCAGAACTGCAACCCCCTTTAAAAGATAACGTTGAGGAAAAGATTGAGTTCCATGATGGAAGGCTGAGGAGAAAAGCTATTTTTGGAGATGACATTGATGATGATCTAAAGGTAATTATCTTGCTGCATGTCATGGTCACTGAACAAAATTCCAATAATTCATTAAGGGCCAGGTTGGTGGCATCTCCAAAATTTCACTTGAAGTACACCATGCTAGAGACAAGAAAACTTGCCTCCCTGGCCCCCCACCAAACCAAATCAACCAGTGAGGTTTTCTGCCAATCAATTATACAAAAATTTAGTGATAAATTTGGAGATTGTAGAAATTGTTGTTCTCAAGGCTTTAAATTGGCACCGATCTATTTCTTTCTTGACTTATTTGATTTGGATGAAGATGATGAAGAAAATGAAGATGATGGAGATAACCTGTCATTTTCTGGTTCATATTCTTCTGAGGAAGATGGAGAGGATCAAAAAACAGATGGAGATGAGATGGGGAATGTTTCAAAGTGGAAAGAGTCCTTGGTGGAAAGAACCATCCCAAAACAAAATACTAATCTTATGCGACTGGTATACGGTGAAGAATCTGCTTCACATTCTACAAATTCTGTTGATGAAGCACATCATAGTAGCGAGGATGAAGAAAGTGAGGATGATGAATTCTTTAAGCCAAAAGGAGAGGGAAACAAGAAGTTGAGAGAAGGATTGGGTAGTGGCCATGTAAATGCTGAGGACTGTTCCAAATTCACAAATCATGCAAATCTCAAGAAATGGAAAGAGGTTGAAATTGTTGAAAGCATTCGTGATCGTTTTATCACTGGGGATTGGTCAAAGGCTGCTAGTAGAGGTCAAGTCTTGGAGACTGGTAGTGATCGTGATGATGATGATGTTTATGGTGAGTTTGAAGACCTAGAAACGGGAGGCTTAAGAAGCTTGCTTTGCGTGCAAAATTTGATGCTCAATATCCTTTCTACTGATATTTTTTTTGAATTTTTGGAACTCAAACTCTCTCTCTTTCCATCCACTGGTCCTTATTGTTATTTTCTTAATCATGACTTGTCTTTCATCAGTCTTTTATGTGAACAATTTCACTGGTTTTCTTTTCCCTCTCATCTGCTTTCTTTTTTAAATGAGGAAATTAATGCTGAACATGGGTCCAAGTTTCACCATAGACAAGCTAATGAAAGTGGATTTTTTGACAAGTTGAAAGAGGAGGTTGAACTTCGGAAACAAATGAATATGGCTGAACTCAATGATCTTGATGAGGAAACTCGAATAGAAGTAGAGGGATTTAGGACAGGAACTTATCTAAGATTGGAGGTCCATGATGTTCCTTTTGAGATGGTTGAACATTTCGATCCGTTCCATCCTGTTTTAGTTGGAGGAATTGGTCTTGGGGAGGAAAATGTTGGTTACATGCAGGTCAGGATAAAGAGGCATAGGTGGCACAAGAAATTACTAAAGACTAGAGACCCAATAATAGTTTCTATTGGATGGAGGCGGTACCAAACTATACCTGTATATGCCACAGAGGACTGCAATGGGCGGCATCGTATGCTCAAATATACTAAAGAACACATGCACTGTCTTGCCATGTTTTGGGGCCCTCTAGCACCTCCGAACACTGGAGTGGTTGCTGTGCAGAATTTATCCAACAATCAGGCAACATTTAGGATCATTGCCACTGCAGTTGTCTTAGAGTTCAATCATGCAGCACGCTTAGTAAAGAAGATCAAGCTAGTTGGTGAGCCCTGCAAAATTTTCAAGAAGACAGCACTTATAAAGAACATGTTTACTTCGGATCTTGAAATAGCTAGGTTTGAAGGTGCAGCAGTCCAGACTGCTAGTGGTATCCGGGGACAGGTGAAGAAGGCTGCAAAAGAAGAGCTTGGTAACCAACCCAAAAAGAAAGGAGGACTTCCTAGAGAAGGGATTGCCAGGTGCACATTCGAGGATAGAATATTGATGAGTGACCTGGTTTTCTTGCGTGCCTGGACTGAAGTTGAAGTTCCTTGCTTCTTCAATCCATTAACAACAGCCCTGCAACCCCGTGATCAGACCTGGCAAGGAATGAAAACTGTGGCTGAATTAAGGAGAGAGAACAAACTTCCCGTTCCTGTTAACAAAGATTCACTCTATAGGCCAATTGAAAGGAAGGCAAGGAAGTTCAACCCGTTGGTTATCCCCAAGTCATTACAGGCGGCTCTCCCCTTTGCTTCAAAGCCCAAAGATATTCTAAAACGAAAGAAGCCTCTTCTGGAGAACCGAAGAGCTGTTGTTATGGAACCCCACGAGCGAAAAGTCCATGCTCTTGTTCAACACCTTCAGATGATTAGAAATGAGAAGATGAAGAAGCGAAAGCTGAAAGAAACAGAAAAGAGGAAAAGATTTGAAGCAGAGAAGGCCAAGGAGGAGCAGGTGTCGAGAAAGCGTCAGAGAGAAGAACGAAAGGAGAGGTACAGGGCACAAGACAAACAGAGTAAGAGAATCCGAAAAGGCCCATGA 3918 40.91 MAGVSGTGDVQPHRSHRSRQSGPSAKKKSKSDKRKRDISDEKKHNPKAFAFSSSVKAKRLQSRATEKEQRRLHIPTIDRSTGEPAPYVVVVHGPPQVGKSLLIKSLVKHYTKHNLSEVRGPITIVSGKNRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLVHGKYPKREIHNLARFISVMKFHPLSWRASHPYILVDRFEDVTPPERVQLNNKCDRNITLYGYLRGCNLKKGTKVHIAGVGDHSLAGVTGLADPCPLPSAAKKKGLRDRDKLFYAPMSGLGDLLYDKDAVYININDHLVQFSNVDDENGGAARKGKDRDVGEVLVKSLQNTKYSIDEKLEKSFISLFGRKPNVSSKANNLNADGSDEGTGSEDSDGSASLEQDHAAKKDATLTSKEGLEEENGNASELQPPLKDNVEEKIEFHDGRLRRKAIFGDDIDDDLKVIILLHVMVTEQNSNNSLRARLVASPKFHLKYTMLETRKLASLAPHQTKSTSEVFCQSIIQKFSDKFGDCRNCCSQGFKLAPIYFFLDLFDLDEDDEENEDDGDNLSFSGSYSSEEDGEDQKTDGDEMGNVSKWKESLVERTIPKQNTNLMRLVYGEESASHSTNSVDEAHHSSEDEESEDDEFFKPKGEGNKKLREGLGSGHVNAEDCSKFTNHANLKKWKEVEIVESIRDRFITGDWSKAASRGQVLETGSDRDDDDVYGEFEDLETGGLRSLLCVQNLMLNILSTDIFFEFLELKLSLFPSTGPYCYFLNHDLSFISLLCEQFHWFSFPSHLLSFLNEEINAEHGSKFHHRQANESGFFDKLKEEVELRKQMNMAELNDLDEETRIEVEGFRTGTYLRLEVHDVPFEMVEHFDPFHPVLVGGIGLGEENVGYMQVRIKRHRWHKKLLKTRDPIIVSIGWRRYQTIPVYATEDCNGRHRMLKYTKEHMHCLAMFWGPLAPPNTGVVAVQNLSNNQATFRIIATAVVLEFNHAARLVKKIKLVGEPCKIFKKTALIKNMFTSDLEIARFEGAAVQTASGIRGQVKKAAKEELGNQPKKKGGLPREGIARCTFEDRILMSDLVFLRAWTEVEVPCFFNPLTTALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKFNPLVIPKSLQAALPFASKPKDILKRKKPLLENRRAVVMEPHERKVHALVQHLQMIRNEKMKKRKLKETEKRKRFEAEKAKEEQVSRKRQREERKERYRAQDKQSKRIRKGP* 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16868287 16900139 - Vvi5g982 Vvi5g982 787124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g982 1305 MobiDBLite consensus disorder prediction 1253 1305 - -
Vvi5g982 1305 CDD BMS1 48 277 IPR037875 GO:0005525
Vvi5g982 1305 MobiDBLite consensus disorder prediction 33 47 - -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 604 645 - -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 1 79 - -
Vvi5g982 1305 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 845 1140 IPR007034 -
Vvi5g982 1305 Coils Coil 874 894 - -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 421 442 - -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 1254 1305 - -
Vvi5g982 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 222 IPR027417 -
Vvi5g982 1305 Gene3D - 87 249 IPR027417 -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 421 481 - -
Vvi5g982 1305 PANTHER RIBOSOME BIOGENESIS PROTEIN 861 1297 IPR039761 GO:0042254
Vvi5g982 1305 PANTHER RIBOSOME BIOGENESIS PROTEIN 12 439 IPR039761 GO:0042254
Vvi5g982 1305 PANTHER RIBOSOME BIOGENESIS PROTEIN 599 780 IPR039761 GO:0042254
Vvi5g982 1305 Pfam AARP2CN (NUC121) domain 235 320 IPR012948 GO:0005634|GO:0042254
Vvi5g982 1305 Coils Coil 1251 1294 - -
Vvi5g982 1305 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 85 249 IPR030387 -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 666 707 - -
Vvi5g982 1305 SMART aarp2cn2 235 321 IPR012948 GO:0005634|GO:0042254
Vvi5g982 1305 MobiDBLite consensus disorder prediction 60 77 - -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 443 468 - -
Vvi5g982 1305 SMART DUF663_2 839 1139 IPR007034 -
Vvi5g982 1305 MobiDBLite consensus disorder prediction 692 707 - -
Vvi5g982 1305 PANTHER BNAC08G44910D PROTEIN 12 439 - -
Vvi5g982 1305 PANTHER BNAC08G44910D PROTEIN 861 1297 - -
Vvi5g982 1305 PANTHER BNAC08G44910D PROTEIN 599 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g982 K14569 BMS1; ribosome biogenesis protein BMS1 - sind:105164729 1487.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g982 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003630 1 1 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 1 1 2 1 1 1 1 1 2 1 3 1 1 43