Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g984 ATGGCTTCGCAACCCATGTTAGGCCCTAGAACGCAGAGTTTTGAAGCAGAAAAATCGGCGGCGACGCTTTTGATTCGGCATCTCCCCGAAGCCATTCCTCAGGACACCCTGTCTCGCCTCTTCTCCAGCTATGGCGCTTCTTCTGTCCGTCCTTGCACTTCTGGAAGATTGAGAAACTGTGCATTTGTGGATTTCAAGAGTGAAATGTTGGCTTCTCAAGCACTACGCCAATTAAATGGGCTGAGGTTTCTTGGTAAAGTTTTGTTAGTGGAGAGAGCAAATAAGCCAACTGAGGATGATAAACAAAAAAGTGAAGCTCTATTTGGCAAGGATCTTACTAAACCCGTATCTTTAATAAAGGATTTTACCATGGCCAGAGATCTCGATGAAGGATTGAAGTCAAGCTCCTTACCTGCTAGTGAACCCATCGCTGCAAGACTTGGCATTGATTACCCATTTCCTCCCCACCTTGAGTACGCTTACCCCCCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTAATTGCTGTTCCTCGCTTCTATGTACAGGTGTTGCACTTGATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCCTTGCCCACCCCACCTTTACCACCTCCAGTACCTGCCCCGCCACCACCACCTCCACCCCCTGAAGCTGCAAGACCTAACTTGGAAGACCTATCTAGTGGCGAGTCTGAAATGGAATCATCAGATGAGGAGGTCGATGGCAATGCCTATTCTACTGGGCCTCCAAGAGAAACAAAACCTGGTCGAAAGCGTGTCAAACGAGAAGCTATTGTAGGCCCTGGAGTTGATAAAGATGTGGCTCACGAGGCTGTTGGAGTGAAACCTGCCACCTTGGTTCCTAAAGAGATTCCAATGATAAAAAAGAAGAACCCTGTGTTGCAGATCAAAATTGTCCCCAAGGTAATCACTGAACATAAAGATGAATGTAGCATCATGAAAGAATCGGAGGATTCTGAGAAAGAGGATTTTGATCTCAAACCTTATGCAACCTTGGAAGAATTAAAAAGTGGAAAGTTGCCTCCAGAGGAAATCTTATCACTTCCAATGTTTAAGAACTATACGGCTGGGAATCCTGCTCCTGTGTTGTACATAAAGAACTTGGCAAAAGATGTGGTTGTAGATGACTTCTATTTCATATTTGGATCATTATTTGGAAGTGTGGATGCTGCTAAATCTGGCCTTAGTGTGAAGTTGATGCAGGAGGGAAGAATGAGGGGCCAAGCTTTTGTGACATTTCCATCAGTTGAACTTGCTCATCATGCTTTGAATTTAGTGAATGGATACGTTTTCAAAGGCAAGCCAATGATTATCCAGTTTGGTCGGAACCCTGCTGCTGCAAAAGAGAAATAA 1392 44.54 MASQPMLGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPCTSGRLRNCAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQKSEALFGKDLTKPVSLIKDFTMARDLDEGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPLPPPVPAPPPPPPPPEAARPNLEDLSSGESEMESSDEEVDGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIVPKVITEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNLVNGYVFKGKPMIIQFGRNPAAAKEK* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16931579 16942505 - Vvi5g984 Vvi5g984 787126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g984 463 MobiDBLite consensus disorder prediction 208 226 - -
Vvi5g984 463 Gene3D - 369 463 IPR012677 -
Vvi5g984 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 456 IPR000504 GO:0003723
Vvi5g984 463 PANTHER UNCHARACTERIZED 15 462 IPR045164 -
Vvi5g984 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 448 IPR000504 GO:0003723
Vvi5g984 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 88 IPR000504 GO:0003723
Vvi5g984 463 MobiDBLite consensus disorder prediction 258 274 - -
Vvi5g984 463 CDD RRM2_RBM40_like 375 454 - -
Vvi5g984 463 SUPERFAMILY RNA-binding domain, RBD 21 457 IPR035979 GO:0003676
Vvi5g984 463 MobiDBLite consensus disorder prediction 208 274 - -
Vvi5g984 463 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 15 462 - -
Vvi5g984 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 95 IPR000504 GO:0003723
Vvi5g984 463 SMART rrm1_1 375 452 IPR000504 GO:0003723
Vvi5g984 463 SMART rrm1_1 22 91 IPR000504 GO:0003723
Vvi5g984 463 Gene3D - 14 112 IPR012677 -
Vvi5g984 463 CDD RRM1_RBM40_like 22 93 IPR034147 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g984 K13157 RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein - vvi:100243611 845.499
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g984 . . . . Bpe04g01004 . . . . . Cma06g01743 . Car06g01478 . . Cpe08g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003933 0 0 1 0 1 2 1 1 2 0 2 1 1 1 1 1 1 0 1 1 1 0 1 1 2 2 1 8 3 2 39