Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g986 ATGGACTTTGACTTTGCCCATTACATGTTGACTAAAAGGGGGAAAGACAAAGAGAACCAAAGTGTTGTCAGGTCTCAATCCAAAGAGGCCTACTTGAAACTACTGGCTGAGACATTCAACATGAATCGCTCTCGCATCCTCGCCTTTAAGAACAAACCACATACTCCAGTAAAATTGATACCGGATGAATTCTATTCCTCTGTTCATCAATCCAAGCGCTCAAAGCCTCTGCGGCATATTCCTCAGACTCCTGAGAGGACATTGGATGCTCCTGATATTATAGATGATTTTTGCTTGAACTTAATGGATTGGAGTAGCAGCAATGTTCTTGCACTTGCTCTTCAAAACACGGTATATTTGTGGGATGCTTCAAATGGTTCTGCCTCAGAGCTTGTCACTGTTGATGATGAGAATGGCCCTGTTACAAGTGTGAGTTGGGCTGCTGATGGACAATACATTGCCATTGGCTTGAACAGTTCTGATGTTCAGCTATGGGATTCTACAGCTAATCGACTGCTGAGGACTCTGAGAGGTGGCCACCAATCACGAGTTGGTTCTCTAGATTGGAAAAACCACATCCTTACAACTGGGGGAATGGATGGTCAGATCATTAACAATGATGTAAGAGTGCACTCGCACATTGTGGCAACTTTTAGAGGACACCGGCAAGAGGTTTGTGGACTGAAATGGTCTACCTCTGGCCAACAGTTAGCGAGTGGAGGAAATGACAATTTACTCTACATATGGGATAGGTCGATGGCCTCTATGCATTCACGTTCTCAGTGGCTTCACAGGCTTGAGGATCACACTGCTGCAGTAAAAGCGCTTGCTTGGTGCCCTTTTCAGCGCAATTTGCTGGCGTCTGGAGGAGGTGGGAGTGATTGTTGCATAAAGTTTTGGAACACCCACACTGGCGCATGCTTGAACTCAGTGGACACTGGCTCACAAGTCTGTGCTCTGCTGTGGAACAAGAACGAGCGTGAGTTGCTTAGCTCCCACGGCTTTATGCAGAATCAACTCACCCTCTGGATGTATCCATCAATGGTGAAGACTGCTGAGCTTACTGGTCATACATCCAGAGTTCTTTTCATGGCTCAGAGTCCAGATGGACGTACAGTGGCAACTGCTGCAGGAGATGAGACTCTCAAGTTTTGGAATGCTTTTGGCATGCCAGAAGTGAAAAAAGCTGCACCAAAAGCAGAGCATCCTGGGCCATTTCCTCATATAAGGCGAATCCGTTAG 1242 46.38 MDFDFAHYMLTKRGKDKENQSVVRSQSKEAYLKLLAETFNMNRSRILAFKNKPHTPVKLIPDEFYSSVHQSKRSKPLRHIPQTPERTLDAPDIIDDFCLNLMDWSSSNVLALALQNTVYLWDASNGSASELVTVDDENGPVTSVSWAADGQYIAIGLNSSDVQLWDSTANRLLRTLRGGHQSRVGSLDWKNHILTTGGMDGQIINNDVRVHSHIVATFRGHRQEVCGLKWSTSGQQLASGGNDNLLYIWDRSMASMHSRSQWLHRLEDHTAAVKALAWCPFQRNLLASGGGGSDCCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFMQNQLTLWMYPSMVKTAELTGHTSRVLFMAQSPDGRTVATAAGDETLKFWNAFGMPEVKKAAPKAEHPGPFPHIRRIR* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16964100 16966907 - Vvi5g986 Vvi5g986 787128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g986 413 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 411 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vvi5g986 413 SUPERFAMILY WD40 repeat-like 52 386 IPR036322 GO:0005515
Vvi5g986 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Vvi5g986 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 386 - -
Vvi5g986 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 250 IPR001680 GO:0005515
Vvi5g986 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 250 - -
Vvi5g986 413 CDD WD40 116 386 - -
Vvi5g986 413 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 411 - -
Vvi5g986 413 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Vvi5g986 413 Pfam WD domain, G-beta repeat 215 250 IPR001680 GO:0005515
Vvi5g986 413 Pfam WD domain, G-beta repeat 263 301 IPR001680 GO:0005515
Vvi5g986 413 Pfam Anaphase-promoting complex subunit 4 WD40 domain 130 191 IPR024977 -
Vvi5g986 413 SMART WD40_4 259 301 IPR001680 GO:0005515
Vvi5g986 413 SMART WD40_4 211 250 IPR001680 GO:0005515
Vvi5g986 413 SMART WD40_4 347 386 IPR001680 GO:0005515
Vvi5g986 413 SMART WD40_4 169 207 IPR001680 GO:0005515
Vvi5g986 413 SMART WD40_4 127 166 IPR001680 GO:0005515
Vvi5g986 413 Gene3D - 42 388 IPR015943 GO:0005515
Vvi5g986 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 386 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g986 K03363 CDC20; cell division cycle 20, cofactor of APC complex - vvi:100247018 855.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67