Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g990 ATGGAGATTAATTTGGGAAAGCTTCCATTCGATATTGATTTCCATCCTTCCAACACGCTCGTTGCTGCAGGTCTGATTAATGGAGACCTTCACTTGTATCGTTATGGTGCCAATTCCTTACCACAAAGGCTATTGGAGGTTCACGCCCATGGCGAAGAATCTTGTAGAGCTGTTCGTTTTATCAACAAGGGACATGCAATTGTGACCGGTTCTCCAGACCGCTCAATTCTTGCCACGGATGTGGAAACTGGATCAGCTATTGCTCGGCTTGAACATTCTCATGGGGCTGCCATTAGTCGATTGATCAACTTGACTGAAACAACCATTGCCTCGGGAGATGATGAAGGATGTATTAAGGTATGGGATACCAGACAACAATCTTGCTGCAACTCCTTTGATGCTCATGAAGAATATATTTCAGATATGACTTTTGCATCTGATTCCATGAAACTTTTGGGAGTGAGTGGAGATGGGACTCTATCTGTTTGCAATCTTCGAAGAAATAAGGTCCAAGTTCAGTCTGAGTTTTCAGAAGATGAGCTACTGTCTGTTGTTTTAATGAAGAACGGTCGAAAAGTTATTTGTGGAACACAGAGTGGAGCTCTATTACTGTATTCATGGGGCCATTTCAAGGATTGCAGTGACCGCTTTATTGATCTCTCTCCAAACTCCGTTGATGCTTTATTGAAGCTTGATGAAGATAGTGTCATTACTGGATCTGAGAATGGACTCATCAGCCTGGTAGGCATATTACCAAACAGAATAATCCAACCAATTGCAGAGCATTCAGAATATCCTGTTGAGCGCCTTGCCTTTTCTTTTGATAGAAAGTATCTTGGCAGTATATCACATGACCAGATGTTGAAGCTATGGGATTTGGATGATCTATTGCAAGGTTCTGGAAGTACTCTAAGGAGTAGAGAAGCCATGGCAGACAGTGATAGCGATGAAATGGATGTGGATGCTAAAGAGACCAAAAGAAAAACAGCGAGTAATGGACAAGCTCTTAACAGCTCTAGTAGCTTTTTTGCCGATTTGTAG 1041 42.17 MEINLGKLPFDIDFHPSNTLVAAGLINGDLHLYRYGANSLPQRLLEVHAHGEESCRAVRFINKGHAIVTGSPDRSILATDVETGSAIARLEHSHGAAISRLINLTETTIASGDDEGCIKVWDTRQQSCCNSFDAHEEYISDMTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVLMKNGRKVICGTQSGALLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSVITGSENGLISLVGILPNRIIQPIAEHSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSREAMADSDSDEMDVDAKETKRKTASNGQALNSSSSFFADL* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17008193 17037290 + Vvi5g990 Vvi5g990 787132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g990 346 MobiDBLite consensus disorder prediction 329 346 - -
Vvi5g990 346 Gene3D - 9 213 IPR015943 GO:0005515
Vvi5g990 346 SMART WD40_4 125 164 IPR001680 GO:0005515
Vvi5g990 346 SMART WD40_4 252 292 IPR001680 GO:0005515
Vvi5g990 346 SMART WD40_4 40 80 IPR001680 GO:0005515
Vvi5g990 346 SMART WD40_4 169 206 IPR001680 GO:0005515
Vvi5g990 346 SMART WD40_4 83 122 IPR001680 GO:0005515
Vvi5g990 346 SMART WD40_4 1 34 IPR001680 GO:0005515
Vvi5g990 346 Pfam WD domain, G-beta repeat 261 292 IPR001680 GO:0005515
Vvi5g990 346 Gene3D - 214 342 IPR015943 GO:0005515
Vvi5g990 346 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Vvi5g990 346 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Vvi5g990 346 PIRSF WD_rpt_55 1 346 IPR017422 -
Vvi5g990 346 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 324 - -
Vvi5g990 346 MobiDBLite consensus disorder prediction 304 346 - -
Vvi5g990 346 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g990 K24750 WDR55, JIP5; WD repeat-containing protein 55 - vvi:100241888 688.337
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .