Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g991 ATGACGGATCCCTCAAACGACGCCGCACATGGTCGGACGGCGCCAAAACTTCCGATCCAAGGGAAGCGCAACATCCTCATTACCAGCGCGTTGCCTTACGTCAACAACGTCCCTCATCTCGGGAACATCATCGGCTGTGTATTGAGTGCAGATGTCTTTGCTCGATATTGTCGTCTTCGTGGTTATAATGCAATATACATATGTGGAACTGATGAGTATGGGACAGCAACAGAAACCAAAGCCATGGAGGAGAAATGCACCCCTCAGCAGATCTGTGACAAATATCATGCAATTCATAAGGAAGTTTATAAATGGTTCAATATAAGTTTTGATGAATTTGGGCGTACATCAAGCCCACAGCAGACCGAAGTTTGCCAAGCAATTTTCAAGAAATTGATGGAGAACAATTGGCTTTCTGAAAACGTTATGCAGCAGCTTTATTGTGATAAATGCCAAAAGTTCTTAGCTGACCGGCTTGTGGAAGGCATTTGCCCTACTCAAGATTGTAATTATGATTCTGCACGAGGAGATCAGTGTGAAAAGTGTGGAAAGCTTTTGAATCCAATTGAACTAAAAGATCCTAGATGCAAGTTCTGTCATTCAACTCCACACATCCGTGATACAAACCACTTGTTTCTTGAGCTCCCTTTGCTGAAGGACAAACTGGAAGAATATATAAATTTAATGTCTGTGGCTGGATCTTGGAGCCAGAATGCTATTCAAGCTACACATGCTTGGCTTAAAGAAGGACTGAAACCACGATGTATTACAAGAGATCTAAAATGGGGGGTTCCTGTTCCACATGAGAAATTCAAGGATAAGGTTTTCTATGTCTGGTTTGATGCGCCGATTGGATATGTCTCAATTACTTCATGCTATACACCCGATTGGGAGAAGTGGTGGAAGAATCCTGAAAATGTTGAGCTGTATCAGTTTATGGGCAAGGATAATGTGCCATTCCATACTGTGATGTTTCCGTCCACACTACTTGGAACTAGTGAAAACTGGACTTTGATGAAGACTATCAGTGTCACTGAATACTTGAACTATGAAGCAGGGAAATTCTCAAAGAGTAAGGGAGTGGGTGTTTTTGGAAATGATGCAAAAGATACAAATATTCCAGTAGAAGTGTGGAGATATTACTTGCTAACTAATAGGCCAGAGGTATCTGACACGCTATTTACATGGGTGGACTTGCAAGCAAAACTCAACAGTGAATTGCTGAATAATTTAGGCAATTTTATAAACCGAGTCTTGAGCTTCATTGCTAAACCTGCAGGTCTAGGATATGGTTCTGTTATTCCTGATGCTCCGGGTGCAGAATTGCATCAATTAACAAAAACATTAGCGGAAAAAGTTGGTAGATTCGTGGAACAATATGTGGAAGCCATGGAGAAGGTTAAACTAAAGCAAGGACTTAAAACTGCAATGAGCATTTCTAGCGAGGGAAATGCATATCTGCAAGAGAGTCAATTCTGGAAGCTTTACAAGGAAGACCAGCCTTCTTGTTCAATTGTTGTGAAAACCTCATTGGGTCTTGTGCATCTTCTTGCATGTTTGTTAGAACCTTTTATGCCTTCCTTCTCTCTTGAGGTACTCAAGCAGCTTAATATGCCTCCTGAAACATCATTTTTGCTCTGTGATGAAAAAGGAGACATTGAAAGGGCAAAGAGACCTTGGGAGATTGTACCTGCTGGCCACAGAATTGGGACTCCAGAGCCATTGTTCAAGGAATTGAAAGATGAAGATGTGGAGTTCTTCAGGGAGAAGTTTGCTGGAAGTCAAGCTGATAGGATTGTGAAGGCAGAAGCTGAAGCAAAGAAAATTGCCGAGCAACTGAAAAAAACAAAAGTTTCAGCGCTTTGCACATCCAACTATTATTTGCTTCATGTTGGACGGTTTAAGTATCTTAAGTCAACGAGTGACAATCAAAGTGTTTCTGAAATTGCCACTGCATTGCATCATGTAAAGGCCAGCCTTAGCATGAGCTCCTTCATGCTATGTAATCACAATGCAAACAAGTATTTAGCTTCTAATCTTCTGAGACTAAGCATCATTAGCCTTGACATTGAAAGATTTCAATGGACCAAGATATACCAATGCCATTGTCATCATTTGCAGTGCCTTACCATTGTCATCAAAGCAGAGCCATCTTTGGCTTGCATGACTTACTGTGTTGACATGGGTGTGTTAGGTGAAGTTGAAGAATTCCGGGTATCATGTGTTTTGGCCCATACCTTTTTTGTACTGATTATGCTAGTGCAAAGTATTTCAGTTAGTTTCTATGGGAATGGAAAGAAACAACGACCAACAAAATCTGCCGAAGCTAAACCTAAGGCTGCAGCAGAGGCAGAAATTTCTATTAGTAGACTTGATATCCGTGTTGGTCTTATAACGAAAGTTCAGAAGCATCCTGATGCTGATTCCCTATATGTTGAAGAGATTGATGTGGGTGAAGGGTCGACTCGGACTGTGGTTAGTGGCCTTGTCAAGTTTATACCACTTGAAGAGATGCAGAACCGCAAGGTATGTGTTCTTTGCAACCTGAAGCCAGCCACAATGCGGGGTATTAAATCTCAAGCAATGGTCCTTGCTGCTTCCAACAGTGAGCATACCAAGGTTGAATTGGTTGAACCACCCCAGTCTGCCGCTGTTGGAGAACGAGTGACATTTCCTGGGTTTGAGGGTGAACCTGATGATGTTCTCAACCCTAAGAAGAAGGTCTGGGAGACACTGCAAGTGGATCTTCGCACTGACTCGGAACTGGTGGCTCTCTACAAAGATGTGCCCTTCACTACAACAGCTGGTATTTGCAAGGTTTCCTCAATTTGTGATGGATCAATACGGTAG 2850 42.18 MTDPSNDAAHGRTAPKLPIQGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQAIFKKLMENNWLSENVMQQLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLLNPIELKDPRCKFCHSTPHIRDTNHLFLELPLLKDKLEEYINLMSVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPAGLGYGSVIPDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVVKTSLGLVHLLACLLEPFMPSFSLEVLKQLNMPPETSFLLCDEKGDIERAKRPWEIVPAGHRIGTPEPLFKELKDEDVEFFREKFAGSQADRIVKAEAEAKKIAEQLKKTKVSALCTSNYYLLHVGRFKYLKSTSDNQSVSEIATALHHVKASLSMSSFMLCNHNANKYLASNLLRLSIISLDIERFQWTKIYQCHCHHLQCLTIVIKAEPSLACMTYCVDMGVLGEVEEFRVSCVLAHTFFVLIMLVQSISVSFYGNGKKQRPTKSAEAKPKAAAEAEISISRLDIRVGLITKVQKHPDADSLYVEEIDVGEGSTRTVVSGLVKFIPLEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSEHTKVELVEPPQSAAVGERVTFPGFEGEPDDVLNPKKKVWETLQVDLRTDSELVALYKDVPFTTTAGICKVSSICDGSIR* 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17060020 17088912 + Vvi5g991 Vvi5g991 787133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g991 949 Pfam tRNA synthetases class I (M) 25 419 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g991 949 CDD MetRS_core 24 394 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 27 40 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 60 74 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 108 119 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 276 287 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 311 326 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 PRINTS Methionyl-tRNA synthetase signature 406 417 IPR033911 GO:0004825|GO:0006431
Vvi5g991 949 SUPERFAMILY Nucleotidylyl transferase 22 406 - -
Vvi5g991 949 TIGRFAM metG: methionine--tRNA ligase 25 551 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Vvi5g991 949 Hamap Methionine--tRNA ligase [metG]. 23 590 IPR023458 GO:0004825
Vvi5g991 949 Pfam Putative tRNA binding domain 793 887 IPR002547 GO:0000049
Vvi5g991 949 SUPERFAMILY Nucleic acid-binding proteins 788 947 IPR012340 -
Vvi5g991 949 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 32 43 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g991 949 CDD tRNA_bind_EMAP-II_like 786 890 - -
Vvi5g991 949 Pfam Anticodon binding domain of methionyl tRNA ligase 440 595 IPR041872 -
Vvi5g991 949 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 160 196 IPR029038 -
Vvi5g991 949 Gene3D - 786 949 IPR012340 -
Vvi5g991 949 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 411 592 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g991 949 Gene3D HUPs 24 402 IPR014729 -
Vvi5g991 949 CDD Anticodon_Ia_Met 403 536 IPR041872 -
Vvi5g991 949 Gene3D - 160 196 IPR029038 -
Vvi5g991 949 Gene3D - 403 577 - -
Vvi5g991 949 ProSiteProfiles tRNA-binding domain profile. 787 890 IPR002547 GO:0000049
Vvi5g991 949 Coils Coil 599 619 - -
Vvi5g991 949 PANTHER METHIONINE--TRNA LIGASE 757 949 IPR023458 GO:0004825
Vvi5g991 949 PANTHER METHIONINE--TRNA LIGASE 12 624 IPR023458 GO:0004825
Vvi5g991 949 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 12 624 - -
Vvi5g991 949 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 757 949 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g991 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - vvi:100257273 1273.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48