Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g997 ATGTATCATACAAAATTTTTGTCATTAATAAGGTCATTTTTATTTTTATTGATTAACCAAACATTGGATTTAGGATTTGCAAACACATCTCGATTGTATTTCACTTGCATACGGAACACTCTTGAAGCTGCCATGTGCCTGCAGAACTTCCCTTGTCAAGAAGTTGAAAGGCATAACAAACCAGAGGTTGAACTAAAGACAAGTCCAGAAGTTCTGCTAAATCCAGTTTTGATTTGTCGGAATGAAGCTGAAAAATGCTTGATAGAAACATCTATCAATTCACTGCGAATAAGCCTCAAGGTAAAGCAGGCTGATGAACTAGAAAATATATTAACTAAGAAATTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAAGTATTGAGGAGAAAACCAGTGCAGGGTTATGACATTAGCTTTCTTATAACAAACTATCACTGTGAGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGAGGCTTGTAGCTACAGAGTTTCTAAAGCAATTCATCTGA 585 35.38 MYHTKFLSLIRSFLFLLINQTLDLGFANTSRLYFTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPEVLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17250963 17270067 - Vvi5g997 Vvi5g997 787139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g997 194 SUPERFAMILY Arp2/3 complex subunits 28 193 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi5g997 194 PIRSF ARPC4 26 194 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Vvi5g997 194 Gene3D - 26 193 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi5g997 194 PANTHER ARP2/3 COMPLEX 20 KD SUBUNIT 27 193 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Vvi5g997 194 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4 27 193 - -
Vvi5g997 194 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 27 192 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g997 K05755 ARPC4; actin related protein 2/3 complex, subunit 4 - vvi:100253856 334.339
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009766 1 2 0 0 1 1 1 1 1 2 0 1 0 2 1 0 1 2 1 1 2 1 1 1 1 1 1 2 1 1 31