Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g999 | ATGGTGAAGAAGAGGGTGCCAGACTGGCTCAACAGTTCTCTCTGGTCCGCTTCTCCCTCTGCCACCGAAGATGACCGCCTCCAGCGCTACGATTCCAAGCCCTCCACCCCTACGCCTCCTTCTCCGGTCGCTCCGCCGGTCCCCGAGCCCCCTCCTGCCGTCGTCCAAGAAGAGCCCCCAAAACCGGAGCCCAAGGAATCCGTAAACAATGTCCATGACGCATCCTCCGACGACTCAGCCGAGGACATTTCTCGCCAGGCTCAGCTCTTGGCGGAGTTATCAAAGAAGGTGATAAATGTGCGGGAACTGCGGAGGCTTGCGTCGCAGGGTATTCCTGATGGCGCTGGGATTCGTTCTACGGTGTGGAAGCTCTTGCTGGGGTATTTACCGACTGATCGTGGACATTGGTCTTCAGAATTGGCTAAAAAGAGGTCCCAATACAAGCATTTCAAAGAAGAGCTTTTGATGAATCCTTCAGAAATCACAAGGAGGTTGGGTAAATCTACAAGTCCTGACGATGAACCTAAATCTGAAGGCAGTGGCATGCTCTCAAGATCAGAAATCACTCATGGAGAGCATCCTTTGAGCCTTGGAAAGACCAGCATCTGGAATCAGTTCTTCCAGGACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGGATGCTTTGAGGAACATATTGATTGTGTTTGCAAAGTTGAATCCGGGTATAAGATATGTGCAAGGGATGAATGAAATTTTGGCGCCTCTATTCTATGTATTCAAAAATGACCCTGATGAGGAAAATGCGGCTTCTGCAGAAGCGGACACATTTTTTTGTTTTGTCGAGTTATTAAGCGGATTCAGGGATCATTTCTGTCAGCAACTCGATAACAGTGTTGTTGGTATCCGATCCACAATTACAAGGTTGTCACAACTCTTGAAAGAACATGATGGAGAGCTCTGGCGTCATCTTGAGATTACAACCAAAGTCAATCCCCAATTTTATGCATTTAGATGGATAACTCTCCTCTTGACTCAAGAGTTCAATTTTGCGGACAGCCTTCACATTTGGGACACACTTCTAAGTGATCCTGAAGGTCCTCAGGAGACACTGCTTCGGATATGTTGTGCAATGCTGATTCTTGTCCGGAGGCGACTGTTGGCAGGTGATTTCACTTCGAATCTCAAGCTGCTCCAAAACTACCCTTCAACAAACATCAGCCACCTGCTTTATGTTGCTAACAAGTTGCGTGCTCAATCCACTGGCTAA | 1314 | 47.95 | MVKKRVPDWLNSSLWSASPSATEDDRLQRYDSKPSTPTPPSPVAPPVPEPPPAVVQEEPPKPEPKESVNNVHDASSDDSAEDISRQAQLLAELSKKVINVRELRRLASQGIPDGAGIRSTVWKLLLGYLPTDRGHWSSELAKKRSQYKHFKEELLMNPSEITRRLGKSTSPDDEPKSEGSGMLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDMNFFSGDTPSAKTNQDALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFKNDPDEENAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRSTITRLSQLLKEHDGELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPSTNISHLLYVANKLRAQSTG* | 438 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 17358931 | 17387128 | - | Vvi5g999 | Vvi5g999 | 787141 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g999 | 437 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 91 | 338 | IPR035969 | - | |
| Vvi5g999 | 437 | MobiDBLite | consensus disorder prediction | 35 | 58 | - | - | |
| Vvi5g999 | 437 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
| Vvi5g999 | 437 | Pfam | Rab-GTPase-TBC domain | 209 | 400 | IPR000195 | - | |
| Vvi5g999 | 437 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 198 | 307 | - | - | |
| Vvi5g999 | 437 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 316 | 433 | IPR035969 | - | |
| Vvi5g999 | 437 | SMART | tbc_4 | 107 | 405 | IPR000195 | - | |
| Vvi5g999 | 437 | Gene3D | - | 315 | 436 | - | - | |
| Vvi5g999 | 437 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Vvi5g999 | 437 | ProSiteProfiles | TBC/rab GAP domain profile. | 112 | 379 | IPR000195 | - | |
| Vvi5g999 | 437 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 3 | 434 | - | - | |
| Vvi5g999 | 437 | MobiDBLite | consensus disorder prediction | 159 | 193 | - | - | |
| Vvi5g999 | 437 | MobiDBLite | consensus disorder prediction | 166 | 180 | - | - | |
| Vvi5g999 | 437 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 3 | 434 | - | - | |
| Vvi5g999 | 437 | Gene3D | - | 81 | 136 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g999 | K24796 | TBC1D13; TBC1 domain family member 13 | - | vvi:100241872 | 807.749 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g999 | . | Blo12g00111 | Bda03g01130 | . | Bpe04g01073 | . | . | . | . | . | Cma06g01698 | . | Car06g01440 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa02g00896 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Car17g00072 | Cpe12g00072 | . | Bhi12g01464 | . | . | . | Hepe03g0386 | . | . | . | . | . | . | . | . | . | Lsi09g01112 | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004668 | 2 | 2 | 2 | 2 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 4 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 42 |