Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1009 ATGACCACTGTCCTCAACATCGACGGTGACCAGCAGCTCCTCGACACTTTTCAACATCTGTCCGTTCAAGATCAGAGGGAAGTGAAAGAGAGTAGAAATGGGAGTCATGGGGGTGTATGTGCGATCTGTCTGGATACGATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGTGTGACATGCATCCTTCGTTGGGCCACATATAGTCAGAAACCAACATGCCCACAATGTAAACATCCTTTTGAATTTCTCAACATTCATCGCTCACTAGATGGCAGCATCCACGATTACATGTTCGAGGAGAGTGTGTGTCTTCTCCTTAGAGCTGCATGGTTTAAACCTTTGATTGTGGAGGAACAAGAAGATATTTATGATGAGGAGGAATATTTTTATCCATATGAAATTAATGAAGTTGATATAGATGAAGATGATCTGGATGAGGTTTACTACAACAATTTGTCAAGTATCCGAATTGGGAATCGGAGATGGGGAACTAATGGATATATTAGGGCAGGACACCAAGAAGCAAGGCCAGTCTATCGACCAAATGCTCAGAGCTCAGGTGCTAGTTCATCTCGTGATTCTGGGAGTTCAGAGGCTAAGAAAGAGACAAAGGGGCGGCGGGCAAAGAGAGCATTGAAACGTGAAGCAGCAGATAAGGCAGCTGCAGAAAAACATGAACGACATTTGGTGAGGTTGGGCCGGAATTGA 726 44.63 MTTVLNIDGDQQLLDTFQHLSVQDQREVKESRNGSHGGVCAICLDTIVLQETAMVKGCEHAYCVTCILRWATYSQKPTCPQCKHPFEFLNIHRSLDGSIHDYMFEESVCLLLRAAWFKPLIVEEQEDIYDEEEYFYPYEINEVDIDEDDLDEVYYNNLSSIRIGNRRWGTNGYIRAGHQEARPVYRPNAQSSGASSSRDSGSSEAKKETKGRRAKRALKREAADKAAAEKHERHLVRLGRN* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16681872 16687232 - Vvi6g1009 Vvi6g1009 788586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1009 241 MobiDBLite consensus disorder prediction 185 200 - -
Vvi6g1009 241 SMART ring_2 40 82 IPR001841 -
Vvi6g1009 241 MobiDBLite consensus disorder prediction 179 241 - -
Vvi6g1009 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 240 - -
Vvi6g1009 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 104 IPR013083 -
Vvi6g1009 241 SUPERFAMILY RING/U-box 39 89 - -
Vvi6g1009 241 ProSiteProfiles Zinc finger RING-type profile. 40 83 IPR001841 -
Vvi6g1009 241 MobiDBLite consensus disorder prediction 201 236 - -
Vvi6g1009 241 Pfam Ring finger domain 40 83 IPR001841 -
Vvi6g1009 241 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1009 - - vvi:100260248 441.425