Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1011 ATGGGCATGGTGGGTCTTCGCGACGTCTTCGTCGTCGCTCCGGCCTCCTCCTTCCACCACAACAACCAGCACGACCCCATCATCTCCGATCCTCACGCCATCAATGGCTCGAATGCAGCCACCGCTCTTGGCCATCGAAGCAAAGGCGGTGGAATACAGTTCTGGCAAAACCAGCAAACCCAGCACGCCAATTATCTCAAGAAACCCATGATTCTCGATCACAATAGCTCTTCCAATTTGCTCAGCTGTGGCGTTGGTGGAGTCGGTGCTTCGGGTCCTACAACCGCGGGTGGGACGACGTGCCAGGACTGTGGAAATCAAGCCAAGAAAGACTGCAGTCATCGCCGGTGCAGAACTTGCTGCAAAAGCCGTGGTTTTGATTGCGCTACTCACGTCAAGAGCACATGGGTTCCGGCCGCTAGGAGGCGAGAGCGACAGCTCATGGTCTCCGTCACTCCCGGAGCAGGCTCTTCAGGGTCCACCTCCGGTGCTAAGAAACCTAGGCTCATCACTTCACAAACTACTACAACATCTCATACTTCCACTTCCAATACAACTCCTCCAAGAAGCTTTGATACTAGTTCGAGTCATCAAGATGCGAGTTTTAAAGAGGCATTGCCGGGGCAAGTCCGAGCCCCGGCCGTGTTCAAGTGTGTTAGAGTGACTGCGGTGGATGATGGCGAAGACGAATATGCTTACCAGGCAGTGGTGAAGATTGGTGGGCATGTGTTCAAAGGGTTTCTATACGATCAAGGGTTGGAAACAAGAGATGGGTTTCCCAATATCTCAGAGCTGCATTTGGGTGGTGGTAGTGGTACTACGGTAACGCAATAA 834 53.0 MGMVGLRDVFVVAPASSFHHNNQHDPIISDPHAINGSNAATALGHRSKGGGIQFWQNQQTQHANYLKKPMILDHNSSSNLLSCGVGGVGASGPTTAGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMVSVTPGAGSSGSTSGAKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKEALPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGLETRDGFPNISELHLGGGSGTTVTQ* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16710788 16713367 - Vvi6g1011 Vvi6g1011 788588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1011 277 MobiDBLite consensus disorder prediction 151 202 - -
Vvi6g1011 277 Pfam Domain of unknown function (DUF702) 98 254 - -
Vvi6g1011 277 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 44 272 IPR007818 GO:0003700|GO:0006355
Vvi6g1011 277 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 100 142 IPR006510 -
Vvi6g1011 277 MobiDBLite consensus disorder prediction 150 202 - -
Vvi6g1011 277 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 44 272 - -
Vvi6g1011 277 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 206 253 IPR006511 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14885 PF05142 DUF702 1.70E-62 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1011 - - vvi:100251674 502.286