Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1028 ATGGAAGCAAAGATAGGAAAATTGTTGGATTCCGTCGGCAACTTTTTCACCGGCGCCGATCAGATCCCATGGTGCGACGGTGACATCGTCGCTGGTTGCGAGAGAGAAGTTGCCGAGGCTGGAAAAGGTTCTTCTGATGAATTGAAGAGCGACTGTATCATGCGTTTATCATGGGCTCTTGTTCACTCAAGACGGCCAGAAGATGTGCAACGTGGTATAGCAATGCTTGAAGCTTCATTGGCTGGCACTAACAGTCCCCTGCAGAAGAGAGAAAAGATGTACCTTATTGCTGTTGGGTATTACAGAAGTGGGGACTATTCAAGGAGTAGGCAGCTTGTGGAATGCTGTTTGGAGATTGCACCTGATTGGAGGCAGGCCCAAACCCTTAAGAAAACAATTGAAGACCGAATTAAGAAAGATGGTGTAATCGGTATAGGTATTGCTGCAACAGTTGTAGGAGTCGTGGTGGGCGGGATTGCAGCAGCTTTTGCTCGTAAGAACTGA 504 47.62 MEAKIGKLLDSVGNFFTGADQIPWCDGDIVAGCEREVAEAGKGSSDELKSDCIMRLSWALVHSRRPEDVQRGIAMLEASLAGTNSPLQKREKMYLIAVGYYRSGDYSRSRQLVECCLEIAPDWRQAQTLKKTIEDRIKKDGVIGIGIAATVVGVVVGGIAAAFARKN* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16920783 16923780 + Vvi6g1028 Vvi6g1028 788605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1028 167 Pfam Fis1 C-terminal tetratricopeptide repeat 90 142 IPR028061 -
Vvi6g1028 167 PIRSF TPR_repeat_11_Fis1 4 166 IPR016543 GO:0000266
Vvi6g1028 167 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 1 167 IPR016543 GO:0000266
Vvi6g1028 167 SUPERFAMILY TPR-like 10 166 IPR011990 GO:0005515
Vvi6g1028 167 Gene3D Tetratricopeptide repeat domain 28 167 IPR011990 GO:0005515
Vvi6g1028 167 Pfam Fis1 N-terminal tetratricopeptide repeat 52 79 IPR028058 -
Vvi6g1028 167 PANTHER MITOCHONDRIAL FISSION 1 PROTEIN 1 167 - -
Vvi6g1028 167 CDD Fis1 23 141 IPR033745 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1028 Vvi8g1194 ECH
Vvi6g1028 Vvi8g1193 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1028 K17969 - vvi:100251692 306.219