Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1078 ATGGAGGAGTGCGCCAAGAGTCTTCCTCATGTTGCAGTCGGGCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCAAAGGAGATACCAAAAATAGGGATCCAGCATACTGGTTCGACTGGACCCCTTGTTTCAGGTGTGGAAGCCCAAATTATCAGTGTAGATACACTAAAGCCTCTTCCTCCTAACCAATTAGGAGAAATATGGGTTCGTGGACCTAATATGATGAAAGGTTATTTCAACAACCCACAGGCCACAAAGCTGACTATAGACAAAAAGGGTTGGGTGCATACTGGAGATGTTGGATATTTTGATGAGCAAGGGAAACTGTTTGTTGTTGATCGAATTAAAGAGCTAATCAAGTATAAAGGTTTTCAGGTCGCACCAGCAGAGCTTGAAGCGCTTCTTGTTTCACACCCTGAAATACTAGATGCTGTTGTTATCCCATTTCCCGATGCTGAAGCTGGAGAGGTACCAATTGCATATGTTGTCCGCTCTCCCAATAGTTCACTGACTGAAGAAGATGTAAAGACATTTATTGCAAATCAGGTTGCACCCTTCAAGAAATTGAGGAGGGTATCATTCATAAACACTGTTCCAAAGTCTGCTTCAGGGAAGATCCTCAGAAGAGAGCTTATTGAGAAAGTACGAGCCAAACTATAG 666 43.09 MEECAKSLPHVAVGQGYGMTETCGIVSKEIPKIGIQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKGYFNNPQATKLTIDKKGWVHTGDVGYFDEQGKLFVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVKTFIANQVAPFKKLRRVSFINTVPKSASGKILRRELIEKVRAKL* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17904723 17912382 - Vvi6g1078 Vvi6g1078 788655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1078 221 Gene3D - 1 118 IPR042099 -
Vvi6g1078 221 SUPERFAMILY Acetyl-CoA synthetase-like 5 217 - -
Vvi6g1078 221 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 219 - -
Vvi6g1078 221 Coils Coil 214 221 - -
Vvi6g1078 221 Gene3D - 119 220 IPR045851 -
Vvi6g1078 221 Pfam AMP-binding enzyme 8 123 IPR000873 -
Vvi6g1078 221 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 219 - -
Vvi6g1078 221 Pfam AMP-binding enzyme C-terminal domain 132 207 IPR025110 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1078 Vvi8g478 ECH
Vvi6g1078 Vvi8g1146 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1078 K01904 - vvi:100267198 442.195