Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g108 ATGGCTCCAGGAGGTGGCATCTGCAAGGAAGTTTGCGAGTCCCGCTCTGCATTTGCAGACTATGATGTAACAACAGCAAATTTGGAACTAAGAAGTTCTCCTTTCAGAAAAGCAACTACTGGTGTTGGTGGAAAGCATGGAATGCCATCAACTAGTGGTGTGCATGAGCTGTTGGAATGCCCTGTTTGCATGGATCTAATGCACCCTCCTATTCACCAGTGTCCAAATGGCCACACTTTATGTTCCAACTGCAAGGCCAGAGTGCACAACTGTTGCCCAACTTGTCGCTTTGAGCTAGGGAATATAAGGTGTTTGGCTTTGGAAAAAATTGCGGAATCACTGGAACTTCCATGCAGATACCAAATTTTCGGTTGTCATGATATTTTCCCATATTACAGCAAGCTCAAGCATGAACAAAACTGCCAGTTTCGCCCATACAGCTGCCCGTATGCTGGGGCTGAGTGTTCTGTCACTGGCGATATTCCGCTCCTTGTCATGCACCTCAAGGATGATCACAAGGTTGATATGCATGATGGGTGTACTTTCAACCACAGATATGTCAAATCCAATCCCCAAGAAGTCGAAAATGCCACATGGATGCTGACTGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACGAAAATGAAGCAAGGAAGTTCAGCTATAGTCTTGAGGTAGGCGGATATGGCAGAAAGCTAATATGGCAAGGAGTTCCCAGGAGCATTCGCGATAGCCATAAAATGGTTCGGGACAGCCAAGATGGACTCGTTATTCAGAGAAAGTTAGCACTTTTCTTCTCTGGTGGCGAGAGGCAGCAACTGAAGCTGAAGGTGGCCGGCCGTATTTGGAAAGAGCAGTGA 927 46.82 MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVHELLECPVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALEKIAESLELPCRYQIFGCHDIFPYYSKLKHEQNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEARKFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLVIQRKLALFFSGGERQQLKLKVAGRIWKEQ* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1222034 1223772 - Vvi6g108 Vvi6g108 787685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g108 308 CDD RING-HC_SIAHs 58 96 - -
Vvi6g108 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 167 IPR013083 -
Vvi6g108 308 ProSiteProfiles Zinc finger SIAH-type profile. 113 173 IPR013010 GO:0008270
Vvi6g108 308 ProSiteProfiles Zinc finger RING-type profile. 60 96 IPR001841 -
Vvi6g108 308 SUPERFAMILY RING/U-box 53 100 - -
Vvi6g108 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 112 IPR013083 -
Vvi6g108 308 SUPERFAMILY TRAF domain-like 113 304 - -
Vvi6g108 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 308 - -
Vvi6g108 308 Pfam Seven in absentia protein family 102 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi6g108 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 301 IPR008974 GO:0005515
Vvi6g108 308 CDD Sina 174 302 - -
Vvi6g108 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 308 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g108 Vvi8g1287 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g108 K04506 - vvi:100267231 662.144