Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1092 ATGCTTCTTACCTTTGACTCTATAATTATCCAAACTTCATCTGGTTTTCACTTTAACTGTTTCCCTGAGTTCCTCACTCCCTACCACCTGCCAAACCTAATCTTTTATATACAGGTACATAATTTTCCATTTCATTACCGACACATTAAATCGGTCCAAGCAAACCTTTGGATTCTTTCCCCTACGCTGATCTTTCTCTTCTCTTCCAAAATCCAGGCAAAGAGTACTTCAATTGAGAGCGGAAACATGGGTGGGGCAGGAGAGAGCAGTACTGGTGGGTGTGGAAGCGGAGAGGTGGGCCGATTTGCAGTTCATGTGATTAGAGGGCGGTGGTTCTCGGTTTACGCCTCCTTCCTGATCATGGTGGGAGCCGGAGCAACTTATCTTTTCGGAATCTATTCAAAAGAAATAAAGTCTTCCATGGGGTACGACCAGTCTACCTTAAATCTCATAGGATTCTTCAAAGATCTGGGTGCAAACGTGGGTGTCCCGGCAGGGCTTATTGCTGAGGTAACGCCCACATGGTTCGTCCTCTTGGTCGGCTCTGCACTGAATTTTTCGGGCTTCTTCATGATATGGCTGGCTGTGACGGGCCAAATAGCCAAGCCAAAGGTTTGGCAGATATGTGCCTACATCTGCGTTGGGGCCAATTCTCAGAACTTTGCAAATACAGGGGCCCTCGTCACCTCTGTCAAGAACTTCCCGGAGAGCCGGGGGCCACAAGCAAAACCACCTAGAGGAGAAGACTACACCATCTTACAAGCCCTCCTAAGCATTGACATGTCCATCCTGTTCCTTGCAACTCTGTTCGGATTGGGGTCAAGTTTAACTGCCATTGACAACTTGGGTCAAATCGGAGAGTCCCTTGGCTACCCAACTAAAACCATAAGCTCCTTTGTGTCACTGGTAAGCATATGGAACTTCTTTGGGAGAGTCTTCGCCGGCTTTCTCTCGGAAGCTCTAGTAGCAAAATGGAAATTCCCTCGGACCCTTATGCTAACCTTAGTCCTTCTCCTGCTATGCGTTGGCCACCTCATGATCGCCTTCCCTATCTCCGGCTCAGTCTACGTAGCATCAGTGATCCTAGGATTCTCATTCGGAGCCCAATTGACTCTGCTTTTCACCATCATTTCCGAGCTCTTTGGCCTAAAGTACTACTCTACATTGTTCAATTGTGGACAACTGGCGTCTCCCCTTGGGACATATGTACTCAATGTGAAGATCACTGGAATGTTTTACGATAATGAGGCCCTGAAGGAGCTGGCAAAAAAGGAACCCGACAATTTTACAAAGGGGACATATACAAGAAGTTCAAAGAGGAAACGAAGCCCTCCGAAATCAATATGGCTTCGGCCTCCACCGTCGATGGGCGATGAAACCAGGACAAGTGTTCAGTTGGAAAGTACTTTTATTATTACTTCAGTTACACTTTTCTTATTTTCAAAAGTTGAAACTATTGTCAATTGTATTTTAGAAAATATTAAAGTCCTCAAACTTTACCTTTTATTTTGTTTTGTTTTTAAATTGTCCCTTCTTATTGATTTGGTGCTCACATTTCCTTCTTGGTGGAAACGACTAAACGAAGAGGGGAAAATGGCTACTGTGGCACCAACAAGCTGTGCCAGTGGGGGTGGCATAGAGGGCTGCAGCAGGGCATCCCGTTTTGCAGTTCATGTGATTAAAGGGCGGTGGTTCAGCGTTTGTGCCTCGTTCCTGGTCATGATTGGACCTGGTTCAACTTATCTTTTCGGAATCTACTCCCAAGAAATAAAGTCTGCTCTTGGTTACGATCAAACAACGTTAAATCTCCTAGGCTTCTTCAAAGATATGGGAACAAACATTGGTGTCCCTGCTGGCCTTGTTGCTGAGGTAACACCCACATGGTTCGTGCTTTTGCTCGGATCTGCCTTGAATTTATGGGGCTACCTGATGATTTGGCTGGCCGTCACCGCCAGAATTGCCAGGCCAAAAGTGTGGCACATGTGTGTGTACAATTTCGTTGGATCCAATTCTCAGAACTTTGCAAACACTGGAGCTCTTGTCACCTGTGTCAAGAACTTCCCGGAGAGTCGCGGCATCATGATAGGCCTATTGAAGGGGTTTGTGGGGCTTGGGGGAGCCATCATGACTCAATTTTACTTTGCCATCTATGGTGATGACTCTAAAGCACTCATACTCATGGTTGGATGGTTTCCAGCTGCCTTGTGCGTGATATTCGTGTACACTATTCGAACTATGAAGGTGGTTAGGCAACCCAATGAGGTTAAAATGTTTTATCAGTTCCTCTATGTATCCATTGTGCTGGCTTTGTTTCTCATGGTAATGACTATAGTTCAGAAACAAATTGTTTTCCCCCGAGCGGCTTATGCTGGAAGTGTCACGGTGGTTTGTGTTCTTCTCTTTCTCCCTTTTGTTATTGCCATTAGAGAGGAGTTAACCTTCTGGAACCTCGAGAGACAGCATGACAATTCTCCCACTGAGGAGGAGGAAAAGCCCAATTCATCATCATTTTTTGCAAATGTTTTCAAGAAACCACCTAGAGGAGAAGATTACACAATCTTACAAGCACTCCTAAGCATTGACATGTTGACTCTATTTCTTGCAACAATGTGCGGACTGGGTTCAAGCTTGACGGCCATAGACAACTTGGGTCAAATTGGTGGGGCACTGGGCTACCCAACTCGAACCATAAGCTCTTTTGTGTCACTAGTAAGCATATGGAATTACTTCGGGAGAGTCTTCTCCGGGTTCGTATCAGAGATCCTAATAGCAAAATGGAAAGTTCCTCGGCCCCTTATGCTCACTCTAACCCTTGTCTTGTTATGCGTTGGCCACCTAATGATTGCCTTCCCTGCCCCTGGCTCGATCTATGTGGCATCAGTGTTCATAGGATTCGCGTACGGCGCACAATTGACACTGATTTTCGCCATCATTTCCGAGCTCTTTGGTCTAAAGTACTATGCCACGTTGTTCAATTGTGGACAACTGGCGACCCCCATTGGGACATATGTACTAAATGTGAAGGTCACTGGAATGTTTTACGATCAGGAGGCTCTAAAGGAGCTCGCAAAGAAGGGTATGACTAGATCATCAGTGAAGGAACTAATTTGCATTGGAGTTCAGTGTTACAAGAAATCCTTTATAATCTTGGCTGCTGGCACCCTATTTGGAGCCGCCGTTTCAATGATTTTGGTTATCAGAACCCAAGAGTTTTACAGAGGCGACATATATAAGAAGTTCAGGGAGCAAGCCGATGCGTCCCAGACAGAGATGGCTTTGTCACCTAGCAACAAGAGTGCGGCAAGACTAGGAAGTCTTCAGTAG 3324 45.73 MLLTFDSIIIQTSSGFHFNCFPEFLTPYHLPNLIFYIQVHNFPFHYRHIKSVQANLWILSPTLIFLFSSKIQAKSTSIESGNMGGAGESSTGGCGSGEVGRFAVHVIRGRWFSVYASFLIMVGAGATYLFGIYSKEIKSSMGYDQSTLNLIGFFKDLGANVGVPAGLIAEVTPTWFVLLVGSALNFSGFFMIWLAVTGQIAKPKVWQICAYICVGANSQNFANTGALVTSVKNFPESRGPQAKPPRGEDYTILQALLSIDMSILFLATLFGLGSSLTAIDNLGQIGESLGYPTKTISSFVSLVSIWNFFGRVFAGFLSEALVAKWKFPRTLMLTLVLLLLCVGHLMIAFPISGSVYVASVILGFSFGAQLTLLFTIISELFGLKYYSTLFNCGQLASPLGTYVLNVKITGMFYDNEALKELAKKEPDNFTKGTYTRSSKRKRSPPKSIWLRPPPSMGDETRTSVQLESTFIITSVTLFLFSKVETIVNCILENIKVLKLYLLFCFVFKLSLLIDLVLTFPSWWKRLNEEGKMATVAPTSCASGGGIEGCSRASRFAVHVIKGRWFSVCASFLVMIGPGSTYLFGIYSQEIKSALGYDQTTLNLLGFFKDMGTNIGVPAGLVAEVTPTWFVLLLGSALNLWGYLMIWLAVTARIARPKVWHMCVYNFVGSNSQNFANTGALVTCVKNFPESRGIMIGLLKGFVGLGGAIMTQFYFAIYGDDSKALILMVGWFPAALCVIFVYTIRTMKVVRQPNEVKMFYQFLYVSIVLALFLMVMTIVQKQIVFPRAAYAGSVTVVCVLLFLPFVIAIREELTFWNLERQHDNSPTEEEEKPNSSSFFANVFKKPPRGEDYTILQALLSIDMLTLFLATMCGLGSSLTAIDNLGQIGGALGYPTRTISSFVSLVSIWNYFGRVFSGFVSEILIAKWKVPRPLMLTLTLVLLCVGHLMIAFPAPGSIYVASVFIGFAYGAQLTLIFAIISELFGLKYYATLFNCGQLATPIGTYVLNVKVTGMFYDQEALKELAKKGMTRSSVKELICIGVQCYKKSFIILAAGTLFGAAVSMILVIRTQEFYRGDIYKKFREQADASQTEMALSPSNKSAARLGSLQ* 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18099730 18108530 + Vvi6g1092 Vvi6g1092 788669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1092 1107 CDD MFS_Mch1p_like 562 1058 - -
Vvi6g1092 1107 SUPERFAMILY MFS general substrate transporter 562 1069 IPR036259 -
Vvi6g1092 1107 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 96 239 - -
Vvi6g1092 1107 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 549 1089 - -
Vvi6g1092 1107 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 242 426 - -
Vvi6g1092 1107 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 242 426 - -
Vvi6g1092 1107 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 549 1089 - -
Vvi6g1092 1107 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 96 239 - -
Vvi6g1092 1107 SUPERFAMILY MFS general substrate transporter 115 403 IPR036259 -
Vvi6g1092 1107 MobiDBLite consensus disorder prediction 429 460 - -
Vvi6g1092 1107 Pfam Nodulin-like 563 808 IPR010658 -
Vvi6g1092 1107 Pfam Nodulin-like 110 240 IPR010658 -
Vvi6g1092 1107 Gene3D MFS general substrate transporter like domains 855 1089 IPR036259 -
Vvi6g1092 1107 Gene3D MFS general substrate transporter like domains 248 420 IPR036259 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1092 - - vvi:100249900 1119.38