Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g1092 | ATGCTTCTTACCTTTGACTCTATAATTATCCAAACTTCATCTGGTTTTCACTTTAACTGTTTCCCTGAGTTCCTCACTCCCTACCACCTGCCAAACCTAATCTTTTATATACAGGTACATAATTTTCCATTTCATTACCGACACATTAAATCGGTCCAAGCAAACCTTTGGATTCTTTCCCCTACGCTGATCTTTCTCTTCTCTTCCAAAATCCAGGCAAAGAGTACTTCAATTGAGAGCGGAAACATGGGTGGGGCAGGAGAGAGCAGTACTGGTGGGTGTGGAAGCGGAGAGGTGGGCCGATTTGCAGTTCATGTGATTAGAGGGCGGTGGTTCTCGGTTTACGCCTCCTTCCTGATCATGGTGGGAGCCGGAGCAACTTATCTTTTCGGAATCTATTCAAAAGAAATAAAGTCTTCCATGGGGTACGACCAGTCTACCTTAAATCTCATAGGATTCTTCAAAGATCTGGGTGCAAACGTGGGTGTCCCGGCAGGGCTTATTGCTGAGGTAACGCCCACATGGTTCGTCCTCTTGGTCGGCTCTGCACTGAATTTTTCGGGCTTCTTCATGATATGGCTGGCTGTGACGGGCCAAATAGCCAAGCCAAAGGTTTGGCAGATATGTGCCTACATCTGCGTTGGGGCCAATTCTCAGAACTTTGCAAATACAGGGGCCCTCGTCACCTCTGTCAAGAACTTCCCGGAGAGCCGGGGGCCACAAGCAAAACCACCTAGAGGAGAAGACTACACCATCTTACAAGCCCTCCTAAGCATTGACATGTCCATCCTGTTCCTTGCAACTCTGTTCGGATTGGGGTCAAGTTTAACTGCCATTGACAACTTGGGTCAAATCGGAGAGTCCCTTGGCTACCCAACTAAAACCATAAGCTCCTTTGTGTCACTGGTAAGCATATGGAACTTCTTTGGGAGAGTCTTCGCCGGCTTTCTCTCGGAAGCTCTAGTAGCAAAATGGAAATTCCCTCGGACCCTTATGCTAACCTTAGTCCTTCTCCTGCTATGCGTTGGCCACCTCATGATCGCCTTCCCTATCTCCGGCTCAGTCTACGTAGCATCAGTGATCCTAGGATTCTCATTCGGAGCCCAATTGACTCTGCTTTTCACCATCATTTCCGAGCTCTTTGGCCTAAAGTACTACTCTACATTGTTCAATTGTGGACAACTGGCGTCTCCCCTTGGGACATATGTACTCAATGTGAAGATCACTGGAATGTTTTACGATAATGAGGCCCTGAAGGAGCTGGCAAAAAAGGAACCCGACAATTTTACAAAGGGGACATATACAAGAAGTTCAAAGAGGAAACGAAGCCCTCCGAAATCAATATGGCTTCGGCCTCCACCGTCGATGGGCGATGAAACCAGGACAAGTGTTCAGTTGGAAAGTACTTTTATTATTACTTCAGTTACACTTTTCTTATTTTCAAAAGTTGAAACTATTGTCAATTGTATTTTAGAAAATATTAAAGTCCTCAAACTTTACCTTTTATTTTGTTTTGTTTTTAAATTGTCCCTTCTTATTGATTTGGTGCTCACATTTCCTTCTTGGTGGAAACGACTAAACGAAGAGGGGAAAATGGCTACTGTGGCACCAACAAGCTGTGCCAGTGGGGGTGGCATAGAGGGCTGCAGCAGGGCATCCCGTTTTGCAGTTCATGTGATTAAAGGGCGGTGGTTCAGCGTTTGTGCCTCGTTCCTGGTCATGATTGGACCTGGTTCAACTTATCTTTTCGGAATCTACTCCCAAGAAATAAAGTCTGCTCTTGGTTACGATCAAACAACGTTAAATCTCCTAGGCTTCTTCAAAGATATGGGAACAAACATTGGTGTCCCTGCTGGCCTTGTTGCTGAGGTAACACCCACATGGTTCGTGCTTTTGCTCGGATCTGCCTTGAATTTATGGGGCTACCTGATGATTTGGCTGGCCGTCACCGCCAGAATTGCCAGGCCAAAAGTGTGGCACATGTGTGTGTACAATTTCGTTGGATCCAATTCTCAGAACTTTGCAAACACTGGAGCTCTTGTCACCTGTGTCAAGAACTTCCCGGAGAGTCGCGGCATCATGATAGGCCTATTGAAGGGGTTTGTGGGGCTTGGGGGAGCCATCATGACTCAATTTTACTTTGCCATCTATGGTGATGACTCTAAAGCACTCATACTCATGGTTGGATGGTTTCCAGCTGCCTTGTGCGTGATATTCGTGTACACTATTCGAACTATGAAGGTGGTTAGGCAACCCAATGAGGTTAAAATGTTTTATCAGTTCCTCTATGTATCCATTGTGCTGGCTTTGTTTCTCATGGTAATGACTATAGTTCAGAAACAAATTGTTTTCCCCCGAGCGGCTTATGCTGGAAGTGTCACGGTGGTTTGTGTTCTTCTCTTTCTCCCTTTTGTTATTGCCATTAGAGAGGAGTTAACCTTCTGGAACCTCGAGAGACAGCATGACAATTCTCCCACTGAGGAGGAGGAAAAGCCCAATTCATCATCATTTTTTGCAAATGTTTTCAAGAAACCACCTAGAGGAGAAGATTACACAATCTTACAAGCACTCCTAAGCATTGACATGTTGACTCTATTTCTTGCAACAATGTGCGGACTGGGTTCAAGCTTGACGGCCATAGACAACTTGGGTCAAATTGGTGGGGCACTGGGCTACCCAACTCGAACCATAAGCTCTTTTGTGTCACTAGTAAGCATATGGAATTACTTCGGGAGAGTCTTCTCCGGGTTCGTATCAGAGATCCTAATAGCAAAATGGAAAGTTCCTCGGCCCCTTATGCTCACTCTAACCCTTGTCTTGTTATGCGTTGGCCACCTAATGATTGCCTTCCCTGCCCCTGGCTCGATCTATGTGGCATCAGTGTTCATAGGATTCGCGTACGGCGCACAATTGACACTGATTTTCGCCATCATTTCCGAGCTCTTTGGTCTAAAGTACTATGCCACGTTGTTCAATTGTGGACAACTGGCGACCCCCATTGGGACATATGTACTAAATGTGAAGGTCACTGGAATGTTTTACGATCAGGAGGCTCTAAAGGAGCTCGCAAAGAAGGGTATGACTAGATCATCAGTGAAGGAACTAATTTGCATTGGAGTTCAGTGTTACAAGAAATCCTTTATAATCTTGGCTGCTGGCACCCTATTTGGAGCCGCCGTTTCAATGATTTTGGTTATCAGAACCCAAGAGTTTTACAGAGGCGACATATATAAGAAGTTCAGGGAGCAAGCCGATGCGTCCCAGACAGAGATGGCTTTGTCACCTAGCAACAAGAGTGCGGCAAGACTAGGAAGTCTTCAGTAG | 3324 | 45.73 | MLLTFDSIIIQTSSGFHFNCFPEFLTPYHLPNLIFYIQVHNFPFHYRHIKSVQANLWILSPTLIFLFSSKIQAKSTSIESGNMGGAGESSTGGCGSGEVGRFAVHVIRGRWFSVYASFLIMVGAGATYLFGIYSKEIKSSMGYDQSTLNLIGFFKDLGANVGVPAGLIAEVTPTWFVLLVGSALNFSGFFMIWLAVTGQIAKPKVWQICAYICVGANSQNFANTGALVTSVKNFPESRGPQAKPPRGEDYTILQALLSIDMSILFLATLFGLGSSLTAIDNLGQIGESLGYPTKTISSFVSLVSIWNFFGRVFAGFLSEALVAKWKFPRTLMLTLVLLLLCVGHLMIAFPISGSVYVASVILGFSFGAQLTLLFTIISELFGLKYYSTLFNCGQLASPLGTYVLNVKITGMFYDNEALKELAKKEPDNFTKGTYTRSSKRKRSPPKSIWLRPPPSMGDETRTSVQLESTFIITSVTLFLFSKVETIVNCILENIKVLKLYLLFCFVFKLSLLIDLVLTFPSWWKRLNEEGKMATVAPTSCASGGGIEGCSRASRFAVHVIKGRWFSVCASFLVMIGPGSTYLFGIYSQEIKSALGYDQTTLNLLGFFKDMGTNIGVPAGLVAEVTPTWFVLLLGSALNLWGYLMIWLAVTARIARPKVWHMCVYNFVGSNSQNFANTGALVTCVKNFPESRGIMIGLLKGFVGLGGAIMTQFYFAIYGDDSKALILMVGWFPAALCVIFVYTIRTMKVVRQPNEVKMFYQFLYVSIVLALFLMVMTIVQKQIVFPRAAYAGSVTVVCVLLFLPFVIAIREELTFWNLERQHDNSPTEEEEKPNSSSFFANVFKKPPRGEDYTILQALLSIDMLTLFLATMCGLGSSLTAIDNLGQIGGALGYPTRTISSFVSLVSIWNYFGRVFSGFVSEILIAKWKVPRPLMLTLTLVLLCVGHLMIAFPAPGSIYVASVFIGFAYGAQLTLIFAIISELFGLKYYATLFNCGQLATPIGTYVLNVKVTGMFYDQEALKELAKKGMTRSSVKELICIGVQCYKKSFIILAAGTLFGAAVSMILVIRTQEFYRGDIYKKFREQADASQTEMALSPSNKSAARLGSLQ* | 1108 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18099730 | 18108530 | + | Vvi6g1092 | Vvi6g1092 | 788669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g1092 | 1107 | CDD | MFS_Mch1p_like | 562 | 1058 | - | - | |
Vvi6g1092 | 1107 | SUPERFAMILY | MFS general substrate transporter | 562 | 1069 | IPR036259 | - | |
Vvi6g1092 | 1107 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4 | 96 | 239 | - | - | |
Vvi6g1092 | 1107 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4 | 549 | 1089 | - | - | |
Vvi6g1092 | 1107 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4 | 242 | 426 | - | - | |
Vvi6g1092 | 1107 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 242 | 426 | - | - | |
Vvi6g1092 | 1107 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 549 | 1089 | - | - | |
Vvi6g1092 | 1107 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 96 | 239 | - | - | |
Vvi6g1092 | 1107 | SUPERFAMILY | MFS general substrate transporter | 115 | 403 | IPR036259 | - | |
Vvi6g1092 | 1107 | MobiDBLite | consensus disorder prediction | 429 | 460 | - | - | |
Vvi6g1092 | 1107 | Pfam | Nodulin-like | 563 | 808 | IPR010658 | - | |
Vvi6g1092 | 1107 | Pfam | Nodulin-like | 110 | 240 | IPR010658 | - | |
Vvi6g1092 | 1107 | Gene3D | MFS general substrate transporter like domains | 855 | 1089 | IPR036259 | - | |
Vvi6g1092 | 1107 | Gene3D | MFS general substrate transporter like domains | 248 | 420 | IPR036259 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g1092 | - | - | vvi:100249900 | 1119.38 |