Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1100 ATGTCCTCTCTCCCCTCCGCCTTCGATGCTCTCATGTCCAAAGCCCGAGCCGCGGCCAAGAAGAAGCCCCAATCCCAGTCCGAATCCCAATCCCAATCCTCGTCTCCGAAGAAGCGCAAAACCCAAACTCAAACCCCAGACCTTGCCCCACCTAAAAAATCTACCAATTCCCAAACCCCCGATTCCAAGATCGAACCATTGGATGCGTTGCCGGCGAAGAAACCGAAGAAGGTTGACGTCGAAGAGTGTATTGGGCAATTGAGGAAAAAGGCGGCGGATTTCAATCCCAAAACGGCGGCGTATTGGGAGGACAAGCCAGTTCCATTTCTTTTTCTTGTCAGGGCTTTTGATATGATTTCCAAGGAGACGGGTCGGATTGTGATTACGGATATTGTGTGCAATATGTTGAGGACGGTGATGCACGCCACCCCGGACGATTTAGTAGCGGTTGTCTATCTTTCAGCCAACAGGATTGCGCCGGCGCATGAGGGCTTGGAGCTTGGGATTGGGGATGCGTCAATTATTAAGGCACTTGCGGAAGCCTGTGGAAGAAAAGAAGAGCAGATTAAGAGCCAGTACAAGGCATTGGGAGATTTGGGGCTTGTTGCAAAAGCATGCCGATCATCCCAGTCTCTGATGCGCAAGCCTGATCCATTAACCGTTGCCAAGGTTTTTAATACATTTGGACTTATTGCCAAGGAATCTGGAAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGACACTTCTTGTTGCAGCCACCGACTGCGAGCCACAGTATTTAATTCGTCTACTTCAGACGAAGTTGCGAATTGGTTTGGCAGAGCAAACTCTGTTAACTGCATTGGGACAAGCTGCTGTATATAATGACAAAGAGTTGACACAACCACCTCCACATATCCAGTCGCCTCTAGAGGAGGCTGCAAATATTGTTAAGCAATCGTACTCTGTACTTCCTGTTTATGATAAAATAGTCCCTGCTCTTCTTAGCGGTGGTGTATGGAATCTTCCAAAGACATGTAGCTTTATGCCAGGTGTCCCTGTTGGACCTATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGATTAAAGAAGTCATCTGTGAGTTCATTTGTTTTGGATTGCGAACTAGTTGCCTATGACCGTCAAAAGGGGAAAATTTTGCCATTCCAGGTCCTCAGCACCCGTGCTCGTAAAAATGTGGTTATGAGTGAAATCAAGGTTGATGTTTGCATATTTGCTTTTGACATTTTGTATCGTAATGGCCAACCACTTCTTCAAGAGCAGCTCAAAATTCGTCGTGAGCATCTTTATGAGTCATTTGAGGAAGAACCTGGATTTTTCCAGTTTGCAACAGCAATAACATCAAATGATCTTGAGGAAATACAAAAATTCCTTGAAGCTGCTGTTGATACCAGTTGTGAAGGCTTGATCATTAAAACATTGAATGGAGATGCTACATATGAGCCTTCAAAGCGGTCACATAACTGGCTAAAATTGAAGAAAGATTACATGGAGAATATTGGTGACTCGCTTGATCTAGTACCTATAGCTGCTTTCCACGGTCGCGGGAAACGTGCAGGTGTCTATGGTGCCTTCCTCCTTGCTTGTTATGACAGCAATAAAGAAGAATATCAAAGCATTTGTAAAATAGGCACTGGATTTTCTGAGGCAGTGCTTGAAGAACGCTCAGCCAGTCTTCGTTCTAAAGTGATTTCCAGACCAAAGCCTTACTATCGGTATGCTGATTCAATTGATCCAGATGTATGGTTTGAACCCACTGAGGTTTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCTGTTCATCGTGCTGCAGTTGGAATAGTGGATCCTAACAAGGGTATTTCTCTTCGGTTTCCACGTCTGGTTCGCATTCGAGATGATAAGAATCCAGAGCAAGCGTCGTCATCTGACTTGGTTGCTGAGATGTATAATGGCCAAAAGCTCAATCACCAGTCCAATCAAGATGAAAATGAAGAAGACTGA 2172 44.71 MSSLPSAFDALMSKARAAAKKKPQSQSESQSQSSSPKKRKTQTQTPDLAPPKKSTNSQTPDSKIEPLDALPAKKPKKVDVEECIGQLRKKAADFNPKTAAYWEDKPVPFLFLVRAFDMISKETGRIVITDIVCNMLRTVMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRKEEQIKSQYKALGDLGLVAKACRSSQSLMRKPDPLTVAKVFNTFGLIAKESGKDSQEKKKNHIKTLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGQAAVYNDKELTQPPPHIQSPLEEAANIVKQSYSVLPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAKPTKGVSEIIDKFQDMEFTCEYKYDGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVSRLKKSSVSSFVLDCELVAYDRQKGKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRNGQPLLQEQLKIRREHLYESFEEEPGFFQFATAITSNDLEEIQKFLEAAVDTSCEGLIIKTLNGDATYEPSKRSHNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDSNKEEYQSICKIGTGFSEAVLEERSASLRSKVISRPKPYYRYADSIDPDVWFEPTEVWEVKAADLTISPVHRAAVGIVDPNKGISLRFPRLVRIRDDKNPEQASSSDLVAEMYNGQKLNHQSNQDENEED* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18191458 18230633 - Vvi6g1100 Vvi6g1100 788677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1100 723 CDD Adenylation_DNA_ligase_I_Euk 340 558 - -
Vvi6g1100 723 PANTHER DNA LIGASE 1 21 723 - -
Vvi6g1100 723 MobiDBLite consensus disorder prediction 20 63 - -
Vvi6g1100 723 SUPERFAMILY Nucleic acid-binding proteins 563 709 IPR012340 -
Vvi6g1100 723 Gene3D - 560 722 IPR012340 -
Vvi6g1100 723 Pfam DNA ligase N terminus 108 283 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1100 723 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 375 383 IPR016059 GO:0003909
Vvi6g1100 723 Gene3D DNA ligase/mRNA capping enzyme 380 505 - -
Vvi6g1100 723 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 21 723 - -
Vvi6g1100 723 CDD OBF_DNA_ligase_I 563 707 - -
Vvi6g1100 723 Pfam ATP dependent DNA ligase domain 351 555 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi6g1100 723 Gene3D - 86 353 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1100 723 ProSiteProfiles ATP-dependent DNA ligase family profile. 457 593 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi6g1100 723 ProSitePatterns ATP-dependent DNA ligase signature 2. 529 555 IPR016059 GO:0003909
Vvi6g1100 723 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 345 561 - -
Vvi6g1100 723 MobiDBLite consensus disorder prediction 691 723 - -
Vvi6g1100 723 MobiDBLite consensus disorder prediction 696 714 - -
Vvi6g1100 723 Pfam ATP dependent DNA ligase C terminal region 580 691 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vvi6g1100 723 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 97 341 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1100 723 Gene3D - 361 559 - -
Vvi6g1100 723 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 166 706 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vvi6g1100 723 MobiDBLite consensus disorder prediction 1 71 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1100 K10747 - vvi:100256907 1376.3