Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1110 ATGATTCCAGTGGGTACTTCTAACTGTTTCGTGAATGGATCGCAAGGGCTACAGATGTATGGAATGACTGCTGAAGGTTCGGTTTCTTCTTCTCTTGGAGGCAGCTCGGTTTTGGAGGCTCACTCCTGCTCTCTCGTCTACAGTTTCTCTATTCTCAAAGACAAGGTCCATCAGGTGCAATCCCTGATCAGCATCTTCGTCCCTCCCAATCAAGGCCAACCCGAGTCTATGGCCATGGCCGTGGCCGGCATGGGCAATTTGATTCAAGAAGTTATTGCAGCTGCATCTTCAATGATGTACAGTTGCCAGCAGATGGGTTATGGTGCAGCTCCAGGTAACAGTGGCACCAATCATGGATTGCCCCAGCAAGGCGTTGAGCTCTCAGATGGCAGGGTCTGCGGCGATACTGGTGTTGTCCAAATGGGAGAAGAAAGAGGGCAAGGATTCTATTCCAGTGATCAATCTCTTGACTGGTATGGCGATAACCATAACAACTCTAATACTAATGATCATAGTCGGACTATCATTGTCAGCAACAATGACAAGACTTTCGATATTGTAGAGTTGGATGCTGAAGATTTGTTAGCCAAGTACACACATTACTGCCAAATTTGTGGAAAAGGGTTCAAGAGAGACGCAAATTTGAGAATGCACATGAGGGCTCACGGGGATGAGTACAAGTCCAATGCTGCTTTAAGCAACCCCACGAAGAATATTGGAAGAGAGATGGAAAATAAAGACGATCTGATAAAATTGCCAAGGAAATACTCATGTCCGCAAGAAGGGTGCAGATGGAACCGGAAGCACGCCAAATTTCAGCCATTGAAATCAATGATATGTGTGAAGAACCATTACAAGAGAAGCCACTGCCCAAAGATGTACATCTGCAAGAGGTGCAACCAGAAACAGTTTTCGGTGTTGTCTGATCTGCGAACCCATGAGAAGCACTGTGGCGATCTCAAGTGGCTGTGCTCCTGCGGCACCACATTTTCTAGGAAAGATAAGCTTATGGGTCACGTTGCTTTGTTCGTTGGACACACTCCAGCCATCAATTCTATGTCAAAGCCAGTAAAGTTTTATCAAAATGCATCACGATTGCAATGA 1104 45.92 MIPVGTSNCFVNGSQGLQMYGMTAEGSVSSSLGGSSVLEAHSCSLVYSFSILKDKVHQVQSLISIFVPPNQGQPESMAMAVAGMGNLIQEVIAAASSMMYSCQQMGYGAAPGNSGTNHGLPQQGVELSDGRVCGDTGVVQMGEERGQGFYSSDQSLDWYGDNHNNSNTNDHSRTIIVSNNDKTFDIVELDAEDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKSNAALSNPTKNIGREMENKDDLIKLPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLRTHEKHCGDLKWLCSCGTTFSRKDKLMGHVALFVGHTPAINSMSKPVKFYQNASRLQ* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18312412 18313585 + Vvi6g1110 Vvi6g1110 788687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1110 367 Gene3D Classic Zinc Finger 178 253 - -
Vvi6g1110 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Vvi6g1110 367 PANTHER OS08G0562300 PROTEIN 12 363 - -
Vvi6g1110 367 SUPERFAMILY beta-beta-alpha zinc fingers 198 224 IPR036236 -
Vvi6g1110 367 SMART c2h2final6 200 222 IPR013087 -
Vvi6g1110 367 SMART c2h2final6 294 316 IPR013087 -
Vvi6g1110 367 SMART c2h2final6 256 289 IPR013087 -
Vvi6g1110 367 Pfam C2H2-type zinc finger 200 222 - -
Vvi6g1110 367 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 363 IPR044300 GO:0010044|GO:0010447
Vvi6g1110 367 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14892 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1110 - - vvi:100244865 732.635